Evidence map›Paper›PMID 38866741›Full record

ArticleNature communications2024

Temporal genomics in Hawaiian crickets reveals compensatory intragenomic coadaptation during adaptive evolution.

Xiao Zhang, Mark Blaxter, Jonathan M D Wood, Alan Tracey, Shane McCarthy, Peter Thorpe, Jack G Rayner, Shangzhe Zhang, Kirstin L Sikkink, Susan L Balenger and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Competing adaptations maintain nonadaptive variation in a wild cricket population.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Divergent alternative mating tactics in convergent male reproductive morphs.Behavioral ecology : official journal of the International Society for Behavioral Ecology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Xiao ZhangTianjin Key Laboratory of Conservation and Utilization of Animal Diversity, College of Life Sciences, Tianjin Normal University, Tianjin, China. xz42@st-andrews.ac.uk.ORCID http://orcid.org/0000-0003-1996-8313
Mark BlaxterTree of Life, Wellcome Sanger Institute, Cambridge, UK.ORCID http://orcid.org/0000-0003-2861-949X
Jonathan M D WoodTree of Life, Wellcome Sanger Institute, Cambridge, UK.ORCID http://orcid.org/0000-0002-7545-2162
Alan TraceyTree of Life, Wellcome Sanger Institute, Cambridge, UK.
Shane McCarthyTree of Life, Wellcome Sanger Institute, Cambridge, UK.ORCID http://orcid.org/0000-0002-2715-4187
Peter ThorpeSchool of Medicine, University of St Andrews, St Andrews, Fife, UK.
Jack G RaynerCentre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, Fife, UK.
Shangzhe ZhangCentre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, Fife, UK.
Kirstin L SikkinkArima Genomics, Carlsbad, CA, USA.
Susan L BalengerCollege of Biological Sciences, University of Minnesota, Saint Paul, MN, USA.
Nathan W BaileyCentre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, Fife, UK. nwb3@st-andrews.ac.uk.ORCID http://orcid.org/0000-0003-3531-7756

Funding

RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/S019669/1RCUK | Natural Environment Research Council (NERC) NE/L011255/1RCUK | Natural Environment Research Council (NERC) NE/T000619/1RCUK | Natural Environment Research Council (NERC) NE/T014806/1RCUK | Natural Environment Research Council (NERC) NE/W001519/1Wellcome TrustWellcome Trust (Wellcome) 105621/Z/14/Z
6 · The paper itself

Abstract

Theory predicts that compensatory genetic changes reduce negative indirect effects of selected variants during adaptive evolution, but evidence is scarce. Here, we test this in a wild population of Hawaiian crickets using temporal genomics and a high-quality chromosome-level cricket genome. In this population, a mutation, flatwing, silences males and rapidly spread due to an acoustically-orienting parasitoid. Our sampling spanned a social transition during which flatwing fixed and the population went silent. We find long-range linkage disequilibrium around the putative flatwing locus was maintained over time, and hitchhiking genes had functions related to negative flatwing-associated effects. We develop a combinatorial enrichment approach using transcriptome data to test for compensatory, intragenomic coevolution. Temporal changes in genomic selection were distributed genome-wide and functionally associated with the population's transition to silence, particularly behavioural responses to silent environments. Our results demonstrate how 'adaptation begets adaptation'; changes to the sociogenetic environment accompanying rapid trait evolution can generate selection provoking further, compensatory adaptation.

Indexed as

GenomicsGryllidaeAdaptation, PhysiologicalAnimalsBiological EvolutionEvolution, MolecularFemaleGenome, InsectHawaiiLinkage DisequilibriumMaleMutationSelection, GeneticTranscriptome

Identifiers

PMID38866741
PMCPMC11169259

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.