Evidence map›Paper›PMID 38868170›Full record

ArticlebioRxiv : the preprint server for biology2024

Visual detection of seizures in mice using supervised machine learning.

Gautam Sabnis, Leinani Hession, J Matthew Mahoney, Arie Mobley, Marina Santos, Vivek Kumar

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Gautam Sabnis *The Jackson Laboratory, Bar Harbor, ME USA.
Leinani Hession *The Jackson Laboratory, Bar Harbor, ME USA.
J Matthew Mahoney *The Jackson Laboratory, Bar Harbor, ME USA.
Arie MobleyThe Jackson Laboratory, Bar Harbor, ME USA.
Marina SantosThe Jackson Laboratory, Bar Harbor, ME USA.
Vivek KumarThe Jackson Laboratory, Bar Harbor, ME USA.ORCID 0000-0001-6643-7465

Funding

Establishment and Characterization of Novel Mutant Mouse Models for the Addiction Research CommunityU01DA051235 · NIDA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2021 to 2025
$4.2M
Machine learning based frailty index for the genetically diverse miceR33AG078530 · NIA · JACKSON LABORATORY · PI VIVEK KUMAR · 2024 to 2026
$2.0M
Machine learning based frailty index for the genetically diverse miceR61AG078530 · NIA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2022 to 2023
$946k
Application of Machine Vision to Determine the Influence of Sleep States and Social Interactions on Vulnerability to Drug AddictionR21DA048634 · NIDA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2019 to 2020
$468k
NIA NIH HHS R33 AG078530NIA NIH HHS R61 AG078530NIDA NIH HHS R21 DA048634NIDA NIH HHS U01 DA051235
6 · The paper itself

Abstract

Seizures are caused by abnormally synchronous brain activity that can result in changes in muscle tone, such as twitching, stiffness, limpness, or rhythmic jerking. These behavioral manifestations are clear on visual inspection and the most widely used seizure scoring systems in preclinical models, such as the Racine scale in rodents, use these behavioral patterns in semiquantitative seizure intensity scores. However, visual inspection is time-consuming, low-throughput, and partially subjective, and there is a need for rigorously quantitative approaches that are scalable. In this study, we used supervised machine learning approaches to develop automated classifiers to predict seizure severity directly from noninvasive video data. Using the PTZ-induced seizure model in mice, we trained video-only classifiers to predict ictal events, combined these events to predict an univariate seizure intensity for a recording session, as well as time-varying seizure intensity scores. Our results show, for the first time, that seizure events and overall intensity can be rigorously quantified directly from overhead video of mice in a standard open field using supervised approaches. These results enable high-throughput, noninvasive, and standardized seizure scoring for downstream applications such as neurogenetics and therapeutic discovery.

Indexed as

Computer VisionEpilepsyHigh ThroughputMachine LearningMouse ModelsSeizureSupervised Learning

Identifiers

PMID38868170
PMCPMC11167691

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.