Evidence map›Paper›PMID 38873940›Full record

ArticleAutophagy2024

The autophagy protein RUBCNL/PACER represses RIPK1 kinase-dependent apoptosis and necroptosis.

Diego Rojas-Rivera, Sebastián Beltrán, Francisco Muñoz-Carvajal, Pablo Ahumada-Montalva, Lorena Abarzúa, Laura Gomez, Fernanda Hernandez, Cristian A Bergmann, Luis Labrador, Melissa Calegaro-Nassif and 3 more

Abstract read
In one paragraph

Article in Autophagy, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Programmed cell death in human respiratory syncytial virus infection.Frontiers in cellular and infection microbiology · 2025
    Pooled it
  2. Post-Translational Modifications in Traumatic Brain Injury: Decoding the Proteomic Landscape and Molecular Mechanisms of Secondary Injury.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Review
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  15. Programmed cell death in triple-negative breast cancer.Cellular & molecular biology letters · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Diego Rojas-RiveraCell Death & Biomedicine Laboratory, Centro de Biomedicina, Universidad Mayor, Santiago, Chile.ORCID 0000-0002-8773-9830
Sebastián BeltránCenter for Integrative Biology, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.ORCID 0000-0002-4101-9387
Francisco Muñoz-CarvajalCell Death & Biomedicine Laboratory, Centro de Biomedicina, Universidad Mayor, Santiago, Chile.ORCID 0009-0003-6650-0374
Pablo Ahumada-MontalvaCell Death & Biomedicine Laboratory, Centro de Biomedicina, Universidad Mayor, Santiago, Chile.
Lorena AbarzúaCell Death & Biomedicine Laboratory, Centro de Biomedicina, Universidad Mayor, Santiago, Chile.
Laura GomezCenter for Integrative Biology, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.
Fernanda HernandezCenter for Integrative Biology, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.
Cristian A BergmannCenter for Integrative Biology, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.ORCID 0000-0001-7564-9742
Luis LabradorCenter for Integrative Biology, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.ORCID 0000-0002-0511-2015
Melissa Calegaro-NassifLaboratorio de Autofagia y Neuroprotección, Centro de Biomedicina, Universidad Mayor, Santiago, Chile.ORCID 0000-0002-5039-5245
Mathieu J M BertrandVIB Center for Inflammation Research, Universidad Mayor, Ghent, Belgium.
Patricio A ManqueCenter for Integrative Biology, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.ORCID 0000-0002-6606-0896
Ute WoehlbierCenter for Integrative Biology, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.ORCID 0000-0003-3114-9708

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mesenchymal stem cells (MSCs) are used in cell therapy; nonetheless, their application is limited by their poor survival after transplantation in a proinflammatory microenvironment. Macroautophagy/autophagy activation in MSCs constitutes a stress adaptation pathway, promoting cellular homeostasis. Our proteomics data indicate that RUBCNL/PACER (RUN and cysteine rich domain containing beclin 1 interacting protein like), a positive regulator of autophagy, is also involved in cell death. Hence, we screened MSC survival upon various cell death stimuli under loss or gain of function of RUBCNL. MSCs were protected from TNF (tumor necrosis factor)-induced regulated cell death when RUBCNL was expressed. TNF promotes inflammation by inducing RIPK1 kinase-dependent apoptosis or necroptosis. We determine that MSCs succumb to RIPK1 kinase-dependent apoptosis upon TNF sensing and necroptosis when caspases are inactivated. We show that RUBCNL is a negative regulator of both RIPK1-dependent apoptosis and necroptosis. Furthermore, RUBCNL mutants that lose the ability to regulate autophagy, retain their function in negatively regulating cell death. We also found that RUBCNL forms a complex with RIPK1, which disassembles in response to TNF. In line with this finding, RUBCNL expression limits assembly of RIPK1-TNFRSF1A/TNFR1 complex I, suggesting that complex formation between RUBCNL and RIPK1 represses TNF signaling. These results provide new insights into the crosstalk between the RIPK1-mediated cell death and autophagy machineries and suggest that RUBCNL, due to its functional duality in autophagy and apoptosis/necroptosis, could be targeted to improve the therapeutic efficacy of MSCs.

Indexed as

ApoptosisAutophagyNecroptosisReceptor-Interacting Protein Serine-Threonine KinasesTumor Necrosis Factor-alphaAnimalsHumansMiceSignal TransductionReceptor-Interacting Protein Serine-Threonine KinasesRIPK1 protein, humanRipk1 protein, mouseTumor Necrosis Factor-alphaCell deathKIAA0226Lmesenchymal stem cellsnecrostatin 1sTNFTNFR1

Identifiers

PMID38873940
PMCPMC11572279

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.