Evidence map›Paper›PMID 38875150›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

N6-methyladenosine modification of a parvovirus-encoded small noncoding RNA facilitates viral DNA replication through recruiting Y-family DNA polymerases.

Kang Ning, Junxing Zhao, Zehua Feng, Soo Yeun Park, Shane McFarlin, Fang Cheng, Ziying Yan, Jingxin Wang, Jianming Qiu

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kang NingDepartment of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, KS 66160.ORCID 0000-0003-1654-9770
Junxing ZhaoDepartment of Medicinal Chemistry, University of Kansas, Lawrence, KS 66045.ORCID 0000-0002-6305-6218
Zehua FengDepartment of Anatomy and Cell Biology, University of Iowa, Iowa City, IA 52242.ORCID 0000-0001-6881-9168
Soo Yeun ParkDepartment of Anatomy and Cell Biology, University of Iowa, Iowa City, IA 52242.
Shane McFarlinDepartment of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, KS 66160.ORCID 0009-0002-1817-7915
Fang ChengDepartment of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, KS 66160.
Ziying YanDepartment of Anatomy and Cell Biology, University of Iowa, Iowa City, IA 52242.
Jingxin WangDepartment of Medicinal Chemistry, University of Kansas, Lawrence, KS 66045.
Jianming QiuDepartment of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, KS 66160.ORCID 0000-0001-9850-1695

Funding

Vector Core-Core 2P30DK054759 · NIDDK · UNIVERSITY OF IOWA · PI Alejandro Antonio Pezzulo · 1998 to 2026
$30.5M
Viral and Host Determinants of Parvovirus ReplicationR01AI150877 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI QIU, JIANMING · 2020 to 2024
$2.4M
Modulating gene expression by RNA-targeting chimerasR35GM147498 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI Jingxin Wang · 2022 to 2026
$2.1M
Super resolution microscope for the imaging core facilityS10OD023625 · OD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI NISHIMUNE, HIROSHI · 2019 to 2019
$987k
Development of a Novel rAAV Vector Without Cross-species Barrier to Transduce Human and Ferret Conducting AirwaysR21AI156448 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI QIU, JIANMING, YAN, ZIYING · 2021 to 2022
$438k
Cystic Fibrosis Foundation (CFF) YAN23G0HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM147498HHS | NIH | NIAID | Division of Microbiology and Infectious Diseases (DMID) AI150877HHS | NIH | NIAID | Division of Microbiology and Infectious Diseases (DMID) AI156448NIAID NIH HHS R01 AI150877NIAID NIH HHS R21 AI156448NIDDK NIH HHS P30 DK054759NIGMS NIH HHS R35 GM147498NIH HHS S10 OD023625
6 · The paper itself

Abstract

Human bocavirus 1 (HBoV1) is a human parvovirus that causes lower respiratory tract infections in young children. It contains a single-stranded (ss) DNA genome of ~5.5 kb that encodes a small noncoding RNA of 140 nucleotides known as bocavirus-encoded small RNA (BocaSR), in addition to viral proteins. Here, we determined the secondary structure of BocaSR in vivo by using DMS-MaPseq. Our findings reveal that BocaSR undergoes N6-methyladenosine (m6A) modification at multiple sites, which is critical for viral DNA replication in both dividing HEK293 cells and nondividing cells of the human airway epithelium. Mechanistically, we found that m6A-modified BocaSR serves as a mediator for recruiting Y-family DNA repair DNA polymerase (Pol) η and Pol κ likely through a direct interaction between BocaSR and the viral DNA replication origin at the right terminus of the viral genome. Thus, this report represents direct involvement of a viral small noncoding RNA in viral DNA replication through m6A modification.

Indexed as

AdenosineDNA-Directed DNA PolymeraseDNA ReplicationDNA, ViralRNA, ViralVirus ReplicationGenome, ViralHEK293 CellsHuman bocavirusHumansParvoviridae InfectionsAdenosineDNA-Directed DNA PolymeraseDNA, ViralN-methyladenosineRNA, ViralDNA replicationm6A modificationparvovirusviral noncoding RNA

Identifiers

PMID38875150
PMCPMC11194592

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.