Evidence map›Paper›PMID 38894540›Full record

ArticleBiophysical journal2024

Cracked actin filaments as mechanosensitive receptors.

Vilmos Zsolnay, Margaret L Gardel, David R Kovar, Gregory A Voth

Abstract read
In one paragraph

Article in Biophysical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Myosin 2 - A general contractor for the cytoskeleton.Current opinion in cell biology · 2025
    Review
  8. Molecular mechanism of Arp2/3 complex activation by nucleation-promoting factors and an actin monomer.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Principles and regulation of mechanosensing.Journal of cell science · 2024
    Review
  15. Article
  16. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Vilmos ZsolnayGraduate Program in Biophysical Sciences, University of Chicago, Chicago, Illinois.
Margaret L GardelDepartment of Physics & Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois; Institute for Biophysical Dynamics and James Franck Institute, University of Chicago, Chicago, Illinois.
David R KovarDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, Illinois; Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois. Electronic address: drkovar@uchicago.edu.
Gregory A VothInstitute for Biophysical Dynamics and James Franck Institute, University of Chicago, Chicago, Illinois; Department of Chemistry and Chicago Center for Theoretical Chemistry, University of Chicago, Chicago, Illinois. Electronic address: gavoth@uchicago.edu.

Funding

New Method for Biomembrane SimulationsR01GM063796 · NIGMS · UNIVERSITY OF UTAH · PI VOTH, GREGORY A. · 2001 to 2025
$6.3M
Mechanisms of Formin-Mediated Actin Filament Assembly - Renewal 01 - ResubmissionR01GM079265 · NIGMS · UNIVERSITY OF CHICAGO · PI KOVAR, DAVID R · 2007 to 2023
$4.5M
Mechanical Regulation of Cell Adhesion by Dynamic Cytoskeletal Assemblies - Resubmission 01R01GM104032 · NIGMS · UNIVERSITY OF CHICAGO · PI GARDEL, MARGARET LISE · 2015 to 2023
$2.5M
Mechanisms of Mechanotransduction by LIM Domain ProteinsR01GM143792 · NIGMS · UNIVERSITY OF CHICAGO · PI GARDEL, MARGARET LISE · 2022 to 2024
$1.4M
NIGMS NIH HHS R01 GM063796NIGMS NIH HHS R01 GM079265NIGMS NIH HHS R01 GM104032NIGMS NIH HHS R01 GM143792
6 · The paper itself

Abstract

Actin filament networks are exposed to mechanical stimuli, but the effect of strain on actin filament structure has not been well established in molecular detail. This is a critical gap in understanding because the activity of a variety of actin-binding proteins has recently been determined to be altered by actin filament strain. We therefore used all-atom molecular dynamics simulations to apply tensile strains to actin filaments and find that changes in actin subunit organization are minimal in mechanically strained, but intact, actin filaments. However, a conformational change disrupts the critical D-loop to W-loop connection between longitudinal neighboring subunits, which leads to a metastable cracked conformation of the actin filament whereby one protofilament is broken prior to filament severing. We propose that the metastable crack presents a force-activated binding site for actin regulatory factors that specifically associate with strained actin filaments. Through protein-protein docking simulations, we find that 43 evolutionarily diverse members of the dual zinc-finger-containing LIM-domain family, which localize to mechanically strained actin filaments, recognize two binding sites exposed at the cracked interface. Furthermore, through its interactions with the crack, LIM domains increase the length of time damaged filaments remain stable. Our findings propose a new molecular model for mechanosensitive binding to actin filaments.

Indexed as

Actin CytoskeletonMolecular Dynamics SimulationActinsAnimalsBinding SitesBiomechanical PhenomenaMechanotransduction, CellularMolecular Docking SimulationProtein DomainsStress, MechanicalActins

Identifiers

PMID38894540
PMCPMC11480757

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.