Evidence map›Paper›PMID 38902233›Full record

ArticleNature communications2024

Orb2 enables rare-codon-enriched mRNA expression during Drosophila neuron differentiation.

Rebeccah K Stewart, Patrick Nguyen, Alain Laederach, Pelin C Volkan, Jessica K Sawyer, Donald T Fox

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Rebeccah K StewartDepartment of Pharmacology & Cancer Biology, Duke University, Durham, NC, USA.
Patrick NguyenDepartment of Pharmacology & Cancer Biology, Duke University, Durham, NC, USA.ORCID http://orcid.org/0009-0005-1638-0567
Alain LaederachDepartment of Biology, University of North Carolina, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-5088-9907
Pelin C VolkanDepartment of Biology, Duke University, Durham, NC, USA.ORCID http://orcid.org/0000-0002-0001-0626
Jessica K SawyerDepartment of Pharmacology & Cancer Biology, Duke University, Durham, NC, USA.
Donald T FoxDepartment of Pharmacology & Cancer Biology, Duke University, Durham, NC, USA. don.fox@duke.edu.ORCID http://orcid.org/0000-0002-0436-179X

Funding

Non-coding RNA structure change in Chronic Obstructive Pulmonary DiseaseR01HL111527 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Alain T Laederach, Kevin M Weeks · 2012 to 2026
$6.6M
Variant induced RNA structure change in human genetic diseaseR35GM140844 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LAEDERACH, ALAIN T · 2021 to 2025
$2.1M
Epigenetic Reprogramming of Behaviors with Sensory ExperienceR01NS109401 · NINDS · DUKE UNIVERSITY · PI JONES, CORBIN D, VOLKAN, PELIN C · 2018 to 2022
$2.0M
Social experience dependent modification of gene regulation and circuit functionR01GM146010 · NIGMS · DUKE UNIVERSITY · PI JONES, CORBIN D, VOLKAN, PELIN C · 2022 to 2025
$1.6M
Regulation of fertility and reproduction by codon usage: a Drosophila modelR01HD113543 · NICHD · DUKE UNIVERSITY · PI Donald T. Fox · 2024 to 2026
$1.0M
American Cancer Society (American Cancer Society, Inc.) RSG-128945NHLBI NIH HHS R01 HL111527NICHD NIH HHS R01 HD113543NIGMS NIH HHS R01 GM146010NIGMS NIH HHS R35 GM140844NINDS NIH HHS R01 NS109401
6 · The paper itself

Abstract

Regulation of codon optimality is an increasingly appreciated layer of cell- and tissue-specific protein expression control. Here, we use codon-modified reporters to show that differentiation of Drosophila neural stem cells into neurons enables protein expression from rare-codon-enriched genes. From a candidate screen, we identify the cytoplasmic polyadenylation element binding (CPEB) protein Orb2 as a positive regulator of rare-codon-dependent mRNA stability in neurons. Using RNA sequencing, we reveal that Orb2-upregulated mRNAs in the brain with abundant Orb2 binding sites have a rare-codon bias. From these Orb2-regulated mRNAs, we demonstrate that rare-codon enrichment is important for mRNA stability and social behavior function of the metabotropic glutamate receptor (mGluR). Our findings reveal a molecular mechanism by which neural stem cell differentiation shifts genetic code regulation to enable critical mRNA stability and protein expression.

Indexed as

Cell DifferentiationDrosophila ProteinsNeural Stem CellsNeuronsRNA, MessengerRNA StabilityAnimalsBrainCodonDrosophilaDrosophila melanogastermRNA Cleavage and Polyadenylation FactorsReceptors, Metabotropic GlutamateTranscription FactorsCodonDrosophila ProteinsmRNA Cleavage and Polyadenylation FactorsOrb2 protein, DrosophilaReceptors, Metabotropic GlutamateRNA, MessengerTranscription Factors

Identifiers

PMID38902233
PMCPMC11190236

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.