Evidence map›Paper›PMID 38915727›Full record

ArticlebioRxiv : the preprint server for biology2024

The C-terminal activating domain promotes Panx1 channel opening.

Erik Henze, Jacqueline J Ehrlich, Janice L Robertson, Toshimitsu Kawate

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Erik HenzeDepartment of Molecular Medicine, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-7594-4319
Jacqueline J EhrlichDepartment of Molecular Medicine, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-8761-7198
Janice L RobertsonDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0002-5499-9943
Toshimitsu KawateDepartment of Molecular Medicine, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-5005-2031

Funding

Driving forces of membrane protein assembly in membranesR01GM120260 · NIGMS · WASHINGTON UNIVERSITY · PI ROBERTSON, JANICE L · 2016 to 2024
$3.4M
Structure and Function of Pannexins: Activation MechanismR01GM114379 · NIGMS · CORNELL UNIVERSITY · PI KAWATE, TOSHIMITSU · 2015 to 2025
$3.1M
Cryo Transmission Electron Microscope for Cryo-EM Sample OptimizationS10OD030470 · OD · CORNELL UNIVERSITY · PI KELLOGG, ELIZABETH · 2021 to 2021
$1.1M
Determinants of amino acid transporter oligomerization in membranesR03NS133680 · NINDS · WASHINGTON UNIVERSITY · PI ROBERTSON, JANICE L · 2023 to 2023
$156k
NIGMS NIH HHS R01 GM114379NIGMS NIH HHS R01 GM120260NIH HHS S10 OD030470NINDS NIH HHS R03 NS133680
6 · The paper itself

Abstract

Pannexin 1 (Panx1) constitutes a large pore channel responsible for the release of ATP from apoptotic cells. Strong evidence indicates that caspase-mediated cleavage of the C-terminus promotes the opening of the Panx1 channel by unplugging the pore. However, this simple pore-plugging mechanism alone cannot account for the observation that a Panx1 construct ending before the caspase cleavage site remains closed. Here, we show that a helical region located immediately before the caspase cleavage site, referred to as the "C-terminal activating domain (CAD)," plays a pivotal role in facilitating Panx1 activation. Electrophysiology and mutagenesis studies uncovered that two conserved leucine residues within the CAD plays a pivotal role. Cryo-EM analysis of the construct ending before reaching the CAD demonstrated that the N-terminus extends into an intracellular pocket. In contrast, the construct including the CAD revealed that this domain occupies the intracellular pocket, causing the N-terminus to flip upward within the pore. Analysis of electrostatic free energy landscape in the closed conformation indicated that the intracellular side of the ion permeation pore may be occupied by anions like ATP, creating an electrostatic barrier for anions attempting to permeate the pore. When the N-terminus flips up, it diminishes the positively charged surface, thereby reducing the drive to accumulate anions inside the pore. This dynamic change in the electrostatic landscape likely contributes to the selection of permeant ions. Collectively, these experiments put forth a novel mechanism in which C-terminal cleavage liberates the CAD, causing the repositioning of the N-terminus to promote Panx1 channel opening.

Identifiers

PMID38915727
PMCPMC11195165

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.