Evidence map›Paper›PMID 38936319›Full record

ReviewCurrent opinion in structural biology2024

Chemical cross-linking and mass spectrometry enabled systems-level structural biology.

Luke Botticelli, Anna A Bakhtina, Nathan K Kaiser, Andrew Keller, Seth McNutt, James E Bruce, Feixia Chu

Abstract readReview
In one paragraph

Review in Current opinion in structural biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Mapping Dysfunctional Protein-Protein Interactions in Disease.Journal of visualized experiments : JoVE · 2025
    Article
  4. Article
  5. Protein Secondary Structure Patterns in Short-Range Cross-Link Atlas.Angewandte Chemie (International ed. in English) · 2025
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Luke BotticelliDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, NH, USA.
Anna A BakhtinaDepartment of Genome Sciences, University of Washington, Seattle WA, USA.
Nathan K KaiserDepartment of Genome Sciences, University of Washington, Seattle WA, USA.
Andrew KellerDepartment of Genome Sciences, University of Washington, Seattle WA, USA.
Seth McNuttDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, NH, USA.
James E BruceDepartment of Genome Sciences, University of Washington, Seattle WA, USA. Electronic address: jimbruce@uw.edu.
Feixia ChuDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, NH, USA. Electronic address: Feixia.Chu@unh.edu.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Selective interactome vulnerability across the Alzheimer’s disease spectrumR01AG072599 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI GABRIELA CHIOSIS, STEPHEN D GINSBERG · 2023 to 2026
$5.4M
Dynamics of the cellular interactomeR35GM136255 · NIGMS · UNIVERSITY OF WASHINGTON · PI James Edward Bruce · 2020 to 2026
$4.0M
Neuropathology and inflammation in a nonhuman primate model of insulin resistance/metabolic syndromeR01AG085572 · NIA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI STEPHEN D GINSBERG, PETER J HAVEL · 2024 to 2026
$3.8M
The heart failure interactomeR01HL144778 · NHLBI · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2019 to 2022
$2.7M
Aging Mitochondrial InteractomeR01AG078279 · NIA · UNIVERSITY OF WASHINGTON · PI James Edward Bruce, David J. Marcinek · 2023 to 2026
$2.2M
NCI NIH HHS P30 CA008748NHLBI NIH HHS R01 HL144778NIA NIH HHS R01 AG072599NIA NIH HHS R01 AG078279NIA NIH HHS R01 AG085572NIGMS NIH HHS R35 GM136255
6 · The paper itself

Abstract

Structural information on protein-protein interactions (PPIs) is essential for improved understanding of regulatory interactome networks that confer various physiological and pathological responses. Additionally, maladaptive PPIs constitute desirable therapeutic targets due to inherently high disease state specificity. Recent advances in chemical cross-linking strategies coupled with mass spectrometry (XL-MS) have positioned XL-MS as a promising technology to not only elucidate the molecular architecture of individual protein assemblies, but also to characterize proteome-wide PPI networks. Moreover, quantitative in vivo XL-MS provides a new capability for the visualization of cellular interactome dynamics elicited by drug treatments, disease states, or aging effects. The emerging field of XL-MS based complexomics enables unique insights on protein moonlighting and protein complex remodeling. These techniques provide complimentary information necessary for in-depth structural interactome studies to better comprehend how PPIs mediate function in living systems.

Indexed as

Cross-Linking ReagentsMass SpectrometryAnimalsHumansProtein Interaction MappingProtein Interaction MapsProteinsProteomicsSystems BiologyCross-Linking ReagentsProteinsChemical cross-linking and mass spectrometry (XL-MS)ComplexomicsNative separationProtein–protein interactions (PPIs)

Identifiers

PMID38936319
PMCPMC11283951

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.