Evidence map›Paper›PMID 38940895›Full record

ArticlePlant biotechnology journal2024

A miniature alternative to Cas9 and Cas12: Transposon-associated TnpB mediates targeted genome editing in plants.

Subhasis Karmakar, Debasmita Panda, Sonali Panda, Manaswini Dash, Romio Saha, Priya Das, S P Avinash, Justin Shih, Yinong Yang, A K Nayak and 2 more

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Wheat's Up with CRISPR-Cas-Current Advances, Obstacles and Perspectives.International journal of molecular sciences · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. From Lab to Field: CRISPRing Major CultivatedInternational journal of molecular sciences · 2026
    Review
  12. Stepwise DNA unwinding gates TnpB genome-editing activity.bioRxiv : the preprint server for biology · 2026
    Article
  13. Review
  14. Review
  15. Mutational scanning of TnpB reveals latent activity for genome editing.bioRxiv : the preprint server for biology · 2025
    Article
  16. STAGE: A compact and versatile TnpB-based genome editing toolkit forProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Subhasis Karmakar *ICAR-National Rice Research Institute, Cuttack, India.
Debasmita Panda *ICAR-National Rice Research Institute, Cuttack, India.
Sonali PandaICAR-National Rice Research Institute, Cuttack, India.
Manaswini DashICAR-National Rice Research Institute, Cuttack, India.
Romio SahaICAR-National Rice Research Institute, Cuttack, India.
Priya DasICAR-National Rice Research Institute, Cuttack, India.
S P AvinashICAR-National Rice Research Institute, Cuttack, India.
Justin ShihDepartment of Plant Pathology and Environmental Microbiology and the Huck Institute of the Life Sciences, The Pennsylvania State University, University Park, PA, USA.
Yinong YangDepartment of Plant Pathology and Environmental Microbiology and the Huck Institute of the Life Sciences, The Pennsylvania State University, University Park, PA, USA.ORCID https://orcid.org/0000-0002-2698-1754
A K NayakICAR-National Rice Research Institute, Cuttack, India.
Mirza J BaigICAR-National Rice Research Institute, Cuttack, India.
Kutubuddin A MollaICAR-National Rice Research Institute, Cuttack, India.ORCID https://orcid.org/0000-0002-9897-7906

Funding

Indian Council of Agricultural Research
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

base editinggene activatorgenome editinghypercompact genome editorminiature nucleaseplant genome engineering

Identifiers

PMID38940895
PMCPMC11536444

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.