Evidence map›Paper›PMID 38940937›Full record

ArticleJournal of molecular medicine (Berlin, Germany)2024

Aging- and alcohol-associated spatial transcriptomic signature in mouse acute pancreatitis reveals heterogeneity of inflammation and potential pathogenic factors.

Rachel R Tindall, Yuntao Yang, Isabella Hernandez, Amy Qin, Jiajing Li, Yinjie Zhang, Thomas H Gomez, Mamoun Younes, Qiang Shen, Jennifer M Bailey-Lundberg and 6 more

Abstract read
In one paragraph

Article in Journal of molecular medicine (Berlin, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Acute pancreatitis: mechanisms and therapeutic approaches.Signal transduction and targeted therapy · 2026
    Review
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Rachel R Tindall *Department of Surgery, UTHealth at Houston, Houston, TX, 77030, USA.
Yuntao Yang *McWilliams School of Biomedical Informatics, UTHealth at Houston, Houston, TX, 77030, USA.
Isabella HernandezDepartment of Surgery, UTHealth at Houston, Houston, TX, 77030, USA.
Amy QinDepartment of Surgery, UTHealth at Houston, Houston, TX, 77030, USA.
Jiajing LiDepartment of Surgery, UTHealth at Houston, Houston, TX, 77030, USA.
Yinjie ZhangDepartment of Surgery, UTHealth at Houston, Houston, TX, 77030, USA.
Thomas H GomezCenter for Laboratory Animal Medicine and Care, UTHealth at Houston, Houston, TX, 77030, USA.
Mamoun YounesDepartment of Pathology, George Washington University School of Medicine and Health Sciences, Washington, DC, 20037, USA.
Qiang ShenDepartment of Interdisciplinary Oncology, Louisiana State Univ. Health Sciences Center, New Orleans, LA, 70112, USA.
Jennifer M Bailey-LundbergDepartment of Anesthesiology, Critical Care and Pain Medicine, UTHealth at Houston, Houston, TX, 77030, USA.
Zhongming ZhaoCenter for Precision Health, McWilliams School of Biomedical Informatics, UTHealth at Houston, Houston, TX, 77030, USA.
Daniel KraushaarGenomic and RNA Profiling Core, Baylor College of Medicine, Houston, TX, 77030, USA.
Patricia CastroHuman Tissue Acquisition & Pathology Core, Baylor College of Medicine, Houston, TX, 77030, USA.
Yanna CaoDepartment of Surgery, UTHealth at Houston, Houston, TX, 77030, USA. Yanna.Cao@uth.tmc.edu.ORCID 0000-0002-3297-776X
W Jim ZhengMcWilliams School of Biomedical Informatics, UTHealth at Houston, Houston, TX, 77030, USA. Wenjin.J.Zheng@uth.tmc.edu.
Tien C KoDepartment of Surgery, UTHealth at Houston, Houston, TX, 77030, USA. Tien.C.Ko@uth.tmc.edu.

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
Convalescent Plasma to Limit Coronavirus Associated ComplicationsUL1TR003167 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KARP, DANIEL D, MCPHERSON, DAVID D · 2019 to 2023
$45.3M
Engagement and outreach to achieve a FAIR data ecosystem for the BICANU24MH130988 · NIMH · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HUA XU, Guo-Qiang ZHANG · 2022 to 2026
$4.6M
Finding Combinatorial Drug Repositioning Therapy For Alzheimer'S Disease And Related DementiasR01AG066749 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI JIANG, XIAOQIAN, ZHENG, WENJIN JIM · 2020 to 2024
$4.4M
Transforming dbGaP genetic and genomic data to FAIR-ready by artificial intelligence and machine learning algorithmsR01LM012806 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Zhongming Zhao · 2017 to 2026
$3.7M
High Throughput Genomic Sequencer at BCM Core FacilityS10OD023469 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2017 to 2017
$600k
Protective Signaling Pathway in Alcohol-Induced PancreatitisR21AA027014 · NIAAA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KO, TIEN C · 2019 to 2020
$406k
NCATS NIH HHS UL1 TR003167NCI NIH HHS P30 CA125123NIAAA NIH HHS R21 AA027014NIA NIH HHS R01 AG066749NIH HHS S10 OD023469NIMH NIH HHS U24 MH130988NLM NIH HHS R01 LM012806
6 · The paper itself

Abstract

The rapidly aging population is consuming more alcohol, leading to increased alcohol-associated acute pancreatitis (AAP) with high mortality. However, the mechanisms remain undefined, and currently there are no effective therapies available. This study aims to elucidate aging- and alcohol-associated spatial transcriptomic signature by establishing an aging AAP mouse model and applying Visium spatial transcriptomics for understanding of the mechanisms in the context of the pancreatic tissue. Upon alcohol diet feeding and caerulein treatment, aging mice (18 months) developed significantly more severe AAP with 5.0-fold increase of injury score and 2.4-fold increase of amylase compared to young mice (3 months). Via Visium spatial transcriptomics, eight distinct tissue clusters were revealed from aggregated transcriptomes of aging and young AAP mice: five acinar, two stromal, and one islet, which were then merged into three clusters: acinar, stromal, and islet for the comparative analysis. Compared to young AAP mice, > 1300 differentially expressed genes (DEGs) and approximately 3000 differentially regulated pathways were identified in aging AAP mice. The top five DEGs upregulated in aging AAP mice include Mmp8, Ppbp, Serpina3m, Cxcl13, and Hamp with heterogeneous distributions among the clusters. Taken together, this study demonstrates spatial heterogeneity of inflammatory processes in aging AAP mice, offering novel insights into the mechanisms and potential drivers for AAP development. KEY MESSAGES: Mechanisms regarding high mortality of AAP in aging remain undefined. An aging AAP mouse model was developed recapturing clinical exhibition in humans. Spatial transcriptomics identified contrasted DEGs in aging vs. young AAP mice. Top five DEGs were Mmp8, Ppbp, Serpina3m, Cxcl13, and Hamp in aging vs. young AAP mice. Our findings shed insights for identification of molecular drivers in aging AAP.

Indexed as

AgingPancreatitisTranscriptomeAcute DiseaseAnimalsDisease Models, AnimalEthanolGene Expression ProfilingInflammationMaleMiceMice, Inbred C57BLPancreasPancreatitis, AlcoholicEthanolAcute pancreatitisAgingAlcoholAlcohol-associated acute pancreatitis mouse modelDifferentially expressed genesVisium spatial transcriptomics

Identifiers

PMID38940937
PMCPMC11269349

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.