Evidence map›Paper›PMID 38946034›Full record

ArticleJournal of the Chinese Medical Association : JCMA2024

WGCNA reveals a biomarker for cancer-associated fibroblasts to predict prognosis in cervical cancer.

Zao-Ling Liu, Nan Chen, Rong Li, Ying-Jie Ma, Aerna Qiayimaerdan, Cai-Ling Ma

Abstract read
In one paragraph

Article in Journal of the Chinese Medical Association : JCMA, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

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0cells of the map it votes in
6citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zao-Ling LiuDepartment of Epidemiology and Health Statistics, School of Public Health, Xinjiang Medical University, Urumqi, China.
Nan ChenDepartment of Epidemiology and Health Statistics, School of Public Health, Xinjiang Medical University, Urumqi, China.
Rong LiDepartment of Epidemiology and Health Statistics, School of Public Health, Xinjiang Medical University, Urumqi, China.
Ying-Jie MaDepartment of Epidemiology and Health Statistics, School of Public Health, Xinjiang Medical University, Urumqi, China.
Aerna QiayimaerdanDepartment of Epidemiology and Health Statistics, School of Public Health, Xinjiang Medical University, Urumqi, China.
Cai-Ling MaDivision of Gynecology, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCancer-associated fibroblasts (CAFs) are crucial components of the cervical cancer tumor microenvironment, playing a significant role in cervical cancer progression, treatment resistance, and immune evasion, but whether the expression of CAF-related genes can predict clinical outcomes in cervical cancer is still unknown. In this study, we sought to analyze genes associated with CAFs through weighted gene co-expression network analysis (WGCNA) and to create a predictive model for CAFs in cervical cancer.

methodsWe acquired transcriptome sequencing data and clinical information on cervical cancer patients from the cancer genome atlas (TCGA) and gene expression omnibus (GEO) databases. WGCNA was conducted to identify genes related to CAFs. We developed a prognostic model based on CAF genes in cervical cancer using the least absolute shrinkage and selection operator (LASSO) Cox regression analysis. Single-cell sequencing data analysis and in vivo experiments for validation of hub genes in CAFs.

resultsA prognostic model for cervical cancer was developed based on CAF genes including COL4A1 , LAMC1 , RAMP3 , POSTN , and SERPINF1 . Cervical cancer patients were divided into low- and high-risk groups based on the optimal cutoff value. Patients in the high-risk group had a significantly worse prognosis. Single-cell RNA sequencing data revealed that hub genes in the CAFs risk model were expressed mainly in fibroblasts. The real-time fluorescence quantitative polymerase chain reaction (PCR) results revealed a significant difference in the expression levels of COL4A1 , LAMC1 , POSTN , and SERPINF1 between the cancer group and the normal group ( p < 0.05). Consistently, the results of the immunohistochemical tests exhibited notable variations in COL4A1, LAMC1, RAMP3, POSTN, and SERPINF1 expression between the cancer and normal groups ( p < 0.001).

conclusionThe CAF risk model for cervical cancer constructed in this study can be used to predict prognosis, while the CAF hub genes can be utilized as crucial markers for cervical cancer prognosis.

Indexed as

Biomarkers, TumorCancer-Associated FibroblastsUterine Cervical NeoplasmsFemaleHumansPrognosisTumor MicroenvironmentBiomarkers, Tumor

Identifiers

PMID38946034
PMCPMC13610161

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.