ArticleGenome research2024
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.
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Article in Genome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
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7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
7 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Methylation profile of individuals with sickle cell trait.Epigenetics · 2025Pooled it
- A novel isoform of tensin-1 promotes actin filament assembly for efficient erythroblast enucleation.Blood advances · 2025Article
- Multiomic analyses on the contribution of transposable elements to the cis-regulatory landscape of different types of immune cells.BMC genomics · 2025Article
- Mechanisms of Globin Gene Regulation in Mammals.Annual review of genetics · 2025Review
- Linker histone regulates the myeloid versus lymphoid bifurcation of multipotent hematopoietic stem and progenitors.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- JMnorm: a novel joint multi-feature normalization method for integrative and comparative epigenomics.Nucleic acids research · 2024Article
- Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation.BMC bioinformatics · 2023Article
Corrections and comments
- Update of
Authors and funding
34 authors.
Guanjue XiangBioinformatics and Genomics Graduate Program, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.ORCID 0000-0003-1328-7197
Xi HeBioinformatics and Genomics Graduate Program, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Belinda M GiardineDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.ORCID 0000-0002-4681-1074
Kathryn J IsaacDepartment of Biology, Johns Hopkins University, Baltimore, Maryland 21218, USA.
Dylan J TaylorDepartment of Biology, Johns Hopkins University, Baltimore, Maryland 21218, USA.ORCID 0000-0001-5806-4494
Rajiv C McCoyDepartment of Biology, Johns Hopkins University, Baltimore, Maryland 21218, USA.ORCID 0000-0003-0615-146X
Camden JansenDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.ORCID 0000-0001-9041-4693
Cheryl A KellerDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.ORCID 0000-0001-6594-0245
Alexander Q WixomDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.ORCID 0000-0003-2982-7303
April CockburnDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Amber MillerDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Qian QiDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Yanghua HeDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.ORCID 0000-0001-6849-6493
Yichao LiDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.ORCID 0000-0001-5791-096X
Jens LichtenbergGenetics and Molecular Biology Branch, National Human Genome Research Institute, Bethesda, Maryland 20892, USA.ORCID 0000-0002-0023-4937
Elisabeth F HeustonGenetics and Molecular Biology Branch, National Human Genome Research Institute, Bethesda, Maryland 20892, USA.ORCID 0000-0002-1603-4083
Stacie M AndersonFlow Cytometry Core, National Human Genome Research Institute, Bethesda, Maryland 20892, USA.
Jing LuanDepartment of Pediatrics, Children's Hospital of Philadelphia, and Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.ORCID 0000-0001-7064-4141
Marit W VermuntDepartment of Pediatrics, Children's Hospital of Philadelphia, and Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Feng YueDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Evanston, Illinois 60611, USA.ORCID 0000-0002-7954-5462
Michael E G SauriaDepartment of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218, USA.ORCID 0000-0001-5556-9446
Michael C SchatzDepartment of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218, USA.ORCID 0000-0002-4118-4446
James TaylorDepartment of Biology, Johns Hopkins University, Baltimore, Maryland 21218, USA.ORCID 0000-0001-5079-840X
Berthold GöttgensWellcome and MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge CB2 0AW, United Kingdom.ORCID 0000-0001-6302-5705
Jim R HughesMRC Weatherall Institute of Molecular Medicine, Oxford University, Oxford OX3 9DS, United Kingdom.ORCID 0000-0002-8955-7256
Douglas R HiggsMRC Weatherall Institute of Molecular Medicine, Oxford University, Oxford OX3 9DS, United Kingdom.ORCID 0000-0003-3579-8705
Mitchell J WeissDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.ORCID 0000-0003-2460-3036
Yong ChengDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.ORCID 0000-0002-9314-0971
Gerd A BlobelDepartment of Pediatrics, Children's Hospital of Philadelphia, and Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.ORCID 0000-0002-0714-9612
David M BodineGenetics and Molecular Biology Branch, National Human Genome Research Institute, Bethesda, Maryland 20892, USA.
Yu ZhangDepartment of Statistics, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Qunhua LiDepartment of Statistics, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.ORCID 0000-0003-0675-7648
Shaun MahonyDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.ORCID 0000-0002-2641-1807
Ross C HardisonDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA; rch8@psu.edu.ORCID 0000-0003-4084-7516
Funding
NHGRI/DIR Flow Cytometry CoreZICHG200350 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ANDERSON, STACIE · 2010 to 2025
$16.3MTranscriptional Networks Controlling Erythroid DifferentiationR01DK054937 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI Gerd A Blobel · 1999 to 2026
$12.8MVISION: ValIdated Systematic IntegratiON of epigenomic dataR24DK106766 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI BLOBEL, GERD A, BODINE, DAVID M. · 2016 to 2020
$6.2MNext Generation Computational Tools for Functional GenomicsR01HG011139 · NHGRI · DANA-FARBER CANCER INST · PI IRIZARRY, RAFAEL ANGEL · 2020 to 2024
$3.5MFunction and fitness consequences of human genetic variationR35GM133747 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Rajiv Champion McCoy · 2019 to 2026
$3.3MStatistical methods for improving reproducibility and utility of sequencing dataR01GM109453 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI LI, QUNHUA · 2013 to 2022
$2.3MA 2D segmentation method for jointly characterizing epigenetic dynamics in multiple cell linesR01GM121613 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI MAHONY, SHAUN AENGUS · 2017 to 2019
$1.0MUncovering sources of human gene expression variation in a globally diverse cohortF31HG012900 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI TAYLOR, DYLAN JAMES · 2023 to 2024
$97kMedical Research Council MC_PC_17230Medical Research Council MR/T014067/1Medical Research Council MR/X001210/1NHGRI NIH HHS F31 HG012900NHGRI NIH HHS R01 HG011139NIDDK NIH HHS R01 DK054937NIDDK NIH HHS R24 DK106766NIGMS NIH HHS R01 GM109453NIGMS NIH HHS R01 GM121613NIGMS NIH HHS R35 GM133747
Abstract
Knowledge of locations and activities of
Indexed as
Epigenesis, GeneticEpigenomeSpecies SpecificityAnimalsBlood CellsEpigenomicsGene Expression RegulationHumansMiceRegulatory Sequences, Nucleic Acid
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Read underepoch 390
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.