Evidence map›Paper›PMID 38955358›Full record

ArticleJournal of biophotonics2024

Deep learning classification of ex vivo human colon tissues using spectroscopic optical coherence tomography.

Wesley Y Kendall, Qinyi Tian, Shi Zhao, Seyedbabak Mirminachi, Erin O'Kane, Abel Joseph, Darin Dufault, David A Miller, Chanjuan Shi, Jatin Roper and 1 more

Abstract read
In one paragraph

Article in Journal of biophotonics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Spectroscopic analysis of volumetric OCT data for the automated measurement of scatterer size.Journal of the Optical Society of America. A, Optics, image science, and vision · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Wesley Y KendallDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, USA.
Qinyi TianDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, USA.
Shi ZhaoDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, USA.
Seyedbabak MirminachiDivision of Gastroenterology, Department of Medicine, Duke University School of Medicine, Durham, North Carolina, USA.
Erin O'KaneDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, USA.
Abel JosephDivision of Gastroenterology, Department of Medicine, Duke University School of Medicine, Durham, North Carolina, USA.
Darin DufaultDivision of Gastroenterology, Department of Medicine, Duke University School of Medicine, Durham, North Carolina, USA.
David A MillerDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, USA.
Chanjuan ShiDepartment of Pathology, Duke University School of Medicine, Durham, North Carolina, USA.
Jatin RoperDivision of Gastroenterology, Department of Medicine, Duke University School of Medicine, Durham, North Carolina, USA.
Adam WaxDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, USA.ORCID 0000-0002-1827-5112

Funding

Low Cost Spectroscopic OCT for GI ApplicationsR41EB032693 · NIBIB · LUMEDICA, INC. · PI BROWN, WILLIAM · 2021 to 2021
$256k
NIBIB NIH HHS R41 EB032693NSF Graduate Research Fellowship Program NIH STTR 1R41EB032693
6 · The paper itself

Abstract

Screening for colorectal cancer (CRC) with colonoscopy has improved patient outcomes; however, it remains the third leading cause of cancer-related mortality, novel strategies to improve screening are needed. Here, we propose an optical biopsy technique based on spectroscopic optical coherence tomography (OCT). Depth resolved OCT images are analyzed as a function of wavelength to measure optical tissue properties and used as input to machine learning algorithms. Previously, we used this approach to analyze mouse colon polyps. Here, we extend the approach to examine human biopsied colonic epithelial tissue samples ex vivo. Optical properties are used as input to a novel deep learning architecture, producing accuracy of up to 97.9% in discriminating tissue type. SOCT parameters are used to create false colored en face OCT images and deep learning classifications are used to enable visual classification by tissue type. This study advances SOCT toward clinical utility for analysis of colonic epithelium.

Indexed as

ColonDeep LearningTomography, Optical CoherenceHumansImage Processing, Computer-Assistedcolorectal cancerlight scatteringoptical coherence tomographyspectroscopy

Identifiers

PMID38955358
PMCPMC11416900

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.