Evidence map›Paper›PMID 38969660›Full record

ArticleNature communications2024

GTPBP8 plays a role in mitoribosome formation in human mitochondria.

Miriam Cipullo, Genís Valentín Gesé, Shreekara Gopalakrishna, Annika Krueger, Vivian Lobo, Maria A Pirozhkova, James Marks, Petra Páleníková, Dmitrii Shiriaev, Yong Liu and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Miriam CipulloDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.
Genís Valentín GeséDepartment of Cell and Molecular Biology, Karolinska Institutet, Solnavägen 9, Stockholm, 17165, Sweden.
Shreekara GopalakrishnaDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.ORCID 0000-0002-8555-0292
Annika KruegerDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.ORCID 0000-0002-2482-0316
Vivian LoboDepartment of Medical Biochemistry and Cell Biology, Institute of Biomedicine, University of Gothenburg, SE-40530, Gothenburg, Sweden.
Maria A PirozhkovaLab for Cellular RNA Biology, Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.
James MarksLaboratory of Muscle Stem Cells and Gene Regulation, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD, USA.
Petra PáleníkováMRC Mitochondrial Biology Unit, University of Cambridge, Cambridge, CB2 0XY, UK.ORCID 0000-0002-2465-4370
Dmitrii ShiriaevDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.
Yong LiuDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.ORCID 0000-0002-0574-2877
Jelena MisicDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.
Yu CaiDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.
Minh Duc NguyenDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.
Abubakar AbdelbagiDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden.ORCID 0009-0009-4087-0274
Xinping LiProteomics Core Facility, Max-Planck-Institute for Biology of Ageing, Joseph-Stelzmann-Str. 9b, 50931, Cologne, Germany.ORCID 0000-0002-7427-0017
Michal MinczukMRC Mitochondrial Biology Unit, University of Cambridge, Cambridge, CB2 0XY, UK.ORCID 0000-0001-8242-1420
Markus HafnerLaboratory of Muscle Stem Cells and Gene Regulation, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-4336-6518
Daniel BenhalevyLab for Cellular RNA Biology, Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0001-6998-1933
Aishe A SarshadDepartment of Medical Biochemistry and Cell Biology, Institute of Biomedicine, University of Gothenburg, SE-40530, Gothenburg, Sweden.ORCID 0000-0001-7153-5959
Ilian AtanassovProteomics Core Facility, Max-Planck-Institute for Biology of Ageing, Joseph-Stelzmann-Str. 9b, 50931, Cologne, Germany.ORCID 0000-0001-8259-2545
B Martin HällbergDepartment of Cell and Molecular Biology, Karolinska Institutet, Solnavägen 9, Stockholm, 17165, Sweden.ORCID 0000-0002-6781-0345
Joanna RorbachDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 17165, Sweden. joanna.rorbach@ki.se.ORCID 0000-0002-2891-2840

Funding

Impact of RNA binding proteins on translation initiation and elongation.ZIAAR041206 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI HAFNER, MARKUS · 2016 to 2025
$5.5M
6 · The paper itself

Abstract

Mitochondrial gene expression relies on mitoribosomes to translate mitochondrial mRNAs. The biogenesis of mitoribosomes is an intricate process involving multiple assembly factors. Among these factors, GTP-binding proteins (GTPBPs) play important roles. In bacterial systems, numerous GTPBPs are required for ribosome subunit maturation, with EngB being a GTPBP involved in the ribosomal large subunit assembly. In this study, we focus on exploring the function of GTPBP8, the human homolog of EngB. We find that ablation of GTPBP8 leads to the inhibition of mitochondrial translation, resulting in significant impairment of oxidative phosphorylation. Structural analysis of mitoribosomes from GTPBP8 knock-out cells shows the accumulation of mitoribosomal large subunit assembly intermediates that are incapable of forming functional monosomes. Furthermore, fPAR-CLIP analysis reveals that GTPBP8 is an RNA-binding protein that interacts specifically with the mitochondrial ribosome large subunit 16 S rRNA. Our study highlights the role of GTPBP8 as a component of the mitochondrial gene expression machinery involved in mitochondrial large subunit maturation.

Indexed as

GTP-Binding ProteinsMitochondrial RibosomesGene ExpressionGTP PhosphohydrolasesHEK293 CellsMitochondriaModels, MolecularOxidative PhosphorylationProtein Interaction MapsProtein Structure, QuaternaryGTP-Binding ProteinsGTP Phosphohydrolases

Identifiers

PMID38969660
PMCPMC11229512

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.