Evidence map›Paper›PMID 38970019›Full record

ArticleBMC plant biology2024

Genome-wide analysis of MYB transcription factor family and AsMYB1R subfamily contribution to ROS homeostasis regulation in Avena sativa under PEG-induced drought stress.

Yang Chen, Aixue Li, Ping Yun, Quan Chen, Dayu Pan, Rui Guo, Han Zhang, Hassan Ahmed Ibraheem Ahmed, Haiying Hu, Yuanying Peng and 7 more

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Yang Chen *Information Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Aixue Li *Information Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Ping YunSchool of Biological Sciences, University of Western Australia, Crawley, WA, 6009, Australia.
Quan ChenInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Dayu PanInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Rui GuoInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Han ZhangInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Hassan Ahmed Ibraheem AhmedDepartment of Botany, Faculty of Science, Port Said University, Port Said, 42526, Egypt.
Haiying HuCollege of Forestry and Prataculture, Ningxia University, Yinchuan, 750021, China.
Yuanying PengState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, 625014, China.
Cheng WangInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Hongtu DongInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Chaoyang QiuInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China.
Lana ShabalaSchool of Biological Sciences, University of Western Australia, Crawley, WA, 6009, Australia.
Sergey ShabalaSchool of Biological Sciences, University of Western Australia, Crawley, WA, 6009, Australia. sergey.shabala@uwa.edu.au.
Bin LuoInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China. luob@nercita.org.cn.
Peichen HouInformation Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100083, China. houpc@nercita.org.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe myeloblastosis (MYB) transcription factor (TF) family is one of the largest and most important TF families in plants, playing an important role in a life cycle and abiotic stress.

resultsIn this study, 268 Avena sativa MYB (AsMYB) TFs from Avena sativa were identified and named according to their order of location on the chromosomes, respectively. Phylogenetic analysis of the AsMYB and Arabidopsis MYB proteins were performed to determine their homology, the AsMYB1R proteins were classified into 5 subgroups, and the AsMYB2R proteins were classified into 34 subgroups. The conserved domains and gene structure were highly conserved among the subgroups. Eight differentially expressed AsMYB genes were screened in the transcriptome of transcriptional data and validated through RT-qPCR. Three genes in AsMYB2R subgroup, which are related to the shortened growth period, stomatal closure, and nutrient and water transport by PEG-induced drought stress, were investigated in more details. The AsMYB1R subgroup genes LHY and REV 1, together with GST, regulate ROS homeostasis to ensure ROS signal transduction and scavenge excess ROS to avoid oxidative damage.

conclusionThe results of this study confirmed that the AsMYB TFs family is involved in the homeostatic regulation of ROS under drought stress. This lays the foundation for further investigating the involvement of the AsMYB TFs family in regulating A. sativa drought response mechanisms.

Indexed as

AvenaDroughtsHomeostasisPhylogenyPlant ProteinsReactive Oxygen SpeciesTranscription FactorsGene Expression Regulation, PlantGenome, PlantGenome-Wide Association StudyMultigene FamilyPolyethylene GlycolsStress, PhysiologicalPlant ProteinsPolyethylene GlycolsReactive Oxygen SpeciesTranscription FactorsAvena sativaDrought stressMYB transcription factorsROS

Identifiers

PMID38970019
PMCPMC11227197

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.