Evidence map›Paper›PMID 38974351›Full record

ArticlePhysiology and molecular biology of plants : an international journal of functional plant biology2024

De novo transcriptome profiling reveals the patterns of gene expression in plum fruits with bud mutations.

Huiyan Liu, Haitian Fang, Guangdi Zhang, Jianshe Li, Xiangjun Zhang, Yu Li

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Physiology and molecular biology of plants : an international journal of functional plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Huiyan Liu *Ningxia Key Laboratory for Food Microbial-Applications Technology and Safety Control, School of Food Science and Engineering, Ningxia University, Yinchuan, 750021 Ningxia China.
Haitian Fang *Ningxia Key Laboratory for Food Microbial-Applications Technology and Safety Control, School of Food Science and Engineering, Ningxia University, Yinchuan, 750021 Ningxia China.ORCID 0000-0003-3153-0648
Guangdi ZhangNingxia Key Laboratory for Food Microbial-Applications Technology and Safety Control, School of Food Science and Engineering, Ningxia University, Yinchuan, 750021 Ningxia China.
Jianshe LiNingxia Key Laboratory for Food Microbial-Applications Technology and Safety Control, School of Food Science and Engineering, Ningxia University, Yinchuan, 750021 Ningxia China.
Xiangjun ZhangSchool of Life Science, Ningxia University, Yinchuan, 750021 Ningxia China.
Yu LiTechnological Innovation Center of Horticulture, Ningxia University), Ningxia Hui Autonomous Region, Yinchuan, 750021 Ningxia China.

Funding

MOLECULAR DISSECTION OF THE ORGAN OF CORTIR01DC005009 · NIDCD · FATHER FLANAGAN'S BOYS'HOME · PI BEISEL, KIRK W. · 2002 to 2006
$1.8M
NIDCD NIH HHS R01 DC005009
6 · The paper itself

Abstract

Bud mutation is a common technique for plant breeding and can provide a large number of breeding materials. Through traditional breeding methods, we obtained a plum plant with bud mutations (named "By") from an original plum variety (named "B"). The ripening period of "By" fruit was longer than that of "B" fruit, and its taste was better. In order to understand the characteristics of these plum varieties, we used transcriptome analysis and compared the gene expression patterns in fruits from the two cultivars. Subsequently, we identified the biological processes regulated by the differentially expressed genes (DEGs). Gene ontology (GO) analysis revealed that these DEGs were highly enriched for "single-organism cellular process" and "transferase activity". KEGG analysis demonstrated that the main pathways affected by the bud mutations were plant hormone signal transduction, starch and sucrose metabolism. The Supplementary Information: The online version contains supplementary material available at 10.1007/s12298-024-01472-3.

Indexed as

Bud mutationsPlant hormonesPlum fruitsSecondary metabolitesTranscriptome

Identifiers

PMID38974351
PMCPMC11222343

What Socratic holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.