Evidence map›Paper›PMID 38982335›Full record

ReviewIntegrative and comparative biology2024

CRISPR/Cas9 Protocols for Disrupting Gene Function in the Non-vertebrate Chordate Ciona.

Sydney Popsuj, Lindsey Cohen, Sydney Ward, Arabella Lewis, Sean Yoshida, R Antonio Herrera, Christina D Cota, Alberto Stolfi

Abstract readReview
In one paragraph

Review in Integrative and comparative biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Regulation of motor neuron differentiation in thebioRxiv : the preprint server for biology · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sydney PopsujSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Lindsey CohenSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Sydney WardSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Arabella LewisSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Sean YoshidaBaylor School, Chattanooga, TN 37405, USA.
R Antonio HerreraBaylor School, Chattanooga, TN 37405, USA.
Christina D CotaBiology Department, Colby College, Waterville, ME 04901, USA.
Alberto StolfiSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.

Funding

Regulation of neurodevelopmental cell behaviors in CionaR01HD104825 · NICHD · GEORGIA INSTITUTE OF TECHNOLOGY · PI Christina Donata Cota, Alberto Stolfi · 2022 to 2026
$1.6M
Harrison and Katherine Weeks Family FundNICHD NIH HHS HD104825NICHD NIH HHS R01 HD104825NIHNSF 1940743NSF award 2052493
6 · The paper itself

Abstract

The evolutionary origins of chordates and their diversification into the three major subphyla of tunicates, vertebrates, and cephalochordates pose myriad questions about the genetic and developmental mechanisms underlying this radiation. Studies in non-vertebrate chordates have refined our model of what the ancestral chordate may have looked like, and have revealed the pre-vertebrate origins of key cellular and developmental traits. Work in the major tunicate laboratory model Ciona has benefitted greatly from the emergence of CRISPR/Cas9 techniques for targeted gene disruption. Here we review some of the important findings made possible by CRISPR in Ciona, and present our latest protocols and recommended practices for plasmid-based, tissue-specific CRISPR/Cas9-mediated mutagenesis.

Indexed as

CRISPR-Cas SystemsAnimalsCionaCiona intestinalisGene EditingMutagenesis

Identifiers

PMID38982335
PMCPMC11579527

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.