Evidence map›Paper›PMID 38997266›Full record

ArticleNature communications2024

Germline β-1,3-glucan deposits are required for female gametogenesis in Arabidopsis thaliana.

Sara C Pinto, Weng Herng Leong, Hweiting Tan, Lauren McKee, Amelie Prevost, Chao Ma, Neil J Shirley, Rosanna Petrella, Xiujuan Yang, Anna M Koltunow and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Revisiting the female germline cell development.Frontiers in plant science · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sara C PintoLAQV REQUIMTE, Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, rua do Campo Alegre s/n, 4169-007, Porto, Portugal.ORCID 0000-0002-1052-5754
Weng Herng LeongWaite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia.
Hweiting TanWaite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia.
Lauren McKeeDepartment of Chemistry, Division of Glycoscience, KTH Royal Institute of Technology, Stockholm, Sweden.ORCID 0000-0002-3372-8773
Amelie PrevostAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Urrbrae, SA, 5064, Australia.
Chao MaWaite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia.
Neil J ShirleyWaite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia.
Rosanna PetrellaDipartimento di Bioscienze, Università Degli Studi di Milano, Via Celoria 26, 20133, Milan, Italy.
Xiujuan YangWaite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia.ORCID 0000-0001-9340-3551
Anna M KoltunowCentre for Crop Sciences, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID 0000-0001-5016-7683
Vincent BuloneWaite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia.ORCID 0000-0003-2809-4160
Masahiro M KanaokaInstitute of Transformative Bio-Molecules, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Tetsuya HigashyiamaInstitute of Transformative Bio-Molecules, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Sílvia CoimbraLAQV REQUIMTE, Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, rua do Campo Alegre s/n, 4169-007, Porto, Portugal.
Matthew R TuckerWaite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia. matthew.tucker@adelaide.edu.au.ORCID 0000-0003-4661-6700

Funding

Department of Education and Training | Australian Research Council (ARC) DP180104092Department of Education and Training | Australian Research Council (ARC) FT140100780
6 · The paper itself

Abstract

Correct regulation of intercellular communication is a fundamental requirement for cell differentiation. In Arabidopsis thaliana, the female germline differentiates from a single somatic ovule cell that becomes encased in β-1,3-glucan, a water insoluble polysaccharide implicated in limiting pathogen invasion, regulating intercellular trafficking in roots, and promoting pollen development. Whether β-1,3-glucan facilitates germline isolation and development has remained contentious, since limited evidence is available to support a functional role. Here, transcriptional profiling of adjoining germline and somatic cells revealed differences in gene expression related to β-1,3-glucan metabolism and signalling through intercellular channels (plasmodesmata). Dominant expression of a β-1,3-glucanase in the female germline transiently perturbed β-1,3-glucan deposits, allowed intercellular movement of tracer molecules, and led to changes in germline gene expression and histone marks, eventually leading to termination of germline development. Our findings indicate that germline β-1,3-glucan fulfils a functional role in the ovule by insulating the primary germline cell, and thereby determines the success of downstream female gametogenesis.

Indexed as

ArabidopsisArabidopsis Proteinsbeta-GlucansGametogenesis, PlantGene Expression Regulation, PlantOvuleGene Expression ProfilingPlasmodesmataPollenArabidopsis Proteinsbeta-1,3-glucanbeta-Glucans

Identifiers

PMID38997266
PMCPMC11245613

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.