Evidence map›Paper›PMID 39003273›Full record

ArticleNature communications2024

Terminal deoxynucleotidyl transferase and CD84 identify human multi-potent lymphoid progenitors.

YeEun Kim, Ariel A Calderon, Patricia Favaro, David R Glass, Albert G Tsai, Daniel Ho, Luciene Borges, William J Greenleaf, Sean C Bendall

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

YeEun KimImmunology Graduate Program, Stanford University, Stanford, CA, USA.ORCID 0000-0003-3347-183X
Ariel A CalderonImmunology Graduate Program, Stanford University, Stanford, CA, USA.
Patricia FavaroDepartment of Pathology, Stanford University, Stanford, CA, USA.
David R GlassImmunology Graduate Program, Stanford University, Stanford, CA, USA.ORCID 0000-0001-9924-167X
Albert G TsaiDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-6607-3347
Daniel HoDepartment of Pathology, Stanford University, Stanford, CA, USA.
Luciene BorgesDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-0499-1919
William J GreenleafDepartment of Genetics, Stanford University, Stanford, CA, USA. wjg@stanford.edu.ORCID 0000-0003-1409-3095
Sean C BendallDepartment of Pathology, Stanford University, Stanford, CA, USA. bendall@stanford.edu.ORCID 0000-0003-1341-2453

Funding

VACCINE INDUCED IMMUNITY IN THE YOUNG AND AGEDU19AI057266 · NIAID · EMORY UNIVERSITY · PI Rafi Ahmed · 2003 to 2026
$81.7M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
PRODUCTION CENTER FOR MAPPING REGULATORY REGIONS OF THE HUMAN GENOMEUM1HG009442 · NHGRI · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2017 to 2021
$20.1M
Stanford Cancer Immune Monitoring and Analysis Center (CIMAC)U24CA224309 · NCI · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Holden T. Maecker · 2017 to 2026
$19.9M
Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
PreCancer Atlas of Familial Adenomatous PolyposisU2CCA233311 · NCI · STANFORD UNIVERSITY · PI FORD, JAMES M., SNYDER, MICHAEL P. · 2018 to 2023
$11.6M
The Bone Marrow Multi-modal Imaging CoreU54HL165445 · NHLBI · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2022 to 2025
$5.9M
High-throughput systematic characterization of regulatory element functionUM1HG009436 · NHGRI · STANFORD UNIVERSITY · PI BASSIK, MICHAEL C, GREENLEAF, WILLIAM JAMES · 2017 to 2021
$5.4M
MIRIAD - Multiplexed Imaging of Resilience In Alzheimers DiseaseR01AG057915 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$4.5M
The Phenotypic Landscape of Cognitive Decline as Revealed by Next-Generation Multiplexed Ion Beam ImagingR01AG056287 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$2.6M
Uncoupling Age- Versus Cognitive-Related Cellular Senescence in Alzheimer's DiseaseR01AG068279 · NIA · STANFORD UNIVERSITY · PI BENDALL, SEAN CURTIS · 2020 to 2024
$1.9M
A robust platform for multiplexed, subcellular proteomic imaging in human tissueUH3CA246633 · NCI · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2019 to 2021
$1.8M
NCI NIH HHS U24 CA224309NCI NIH HHS U2C CA233311NCI NIH HHS UH3 CA246633NHGRI NIH HHS RM1 HG007735NHGRI NIH HHS UM1 HG009436NHGRI NIH HHS UM1 HG009442NHLBI NIH HHS U54 HL165445NIAID NIH HHS T32 AI007290NIAID NIH HHS U19 AI057266NIA NIH HHS R01 AG056287NIA NIH HHS R01 AG057915NIA NIH HHS R01 AG068279
6 · The paper itself

Abstract

Lymphoid specification in human hematopoietic progenitors is not fully understood. To better associate lymphoid identity with protein-level cell features, we conduct a highly multiplexed single-cell proteomic screen on human bone marrow progenitors. This screen identifies terminal deoxynucleotidyl transferase (TdT), a specialized DNA polymerase intrinsic to VDJ recombination, broadly expressed within CD34

Indexed as

DNA NucleotidylexotransferaseLymphoid Progenitor CellsAntigens, CDAntigens, CD34Cell DifferentiationHematopoiesisHematopoietic Stem CellsHumansProteomicsSignaling Lymphocytic Activation Molecule FamilySingle-Cell AnalysisAntigens, CDAntigens, CD34CD84 protein, humanDNA NucleotidylexotransferaseSignaling Lymphocytic Activation Molecule Family

Identifiers

PMID39003273
PMCPMC11246490

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.