Evidence map›Paper›PMID 39008691›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Tropism for ciliated cells is the dominant driver of influenza viral burst size in the human airway.

Shanley N Roach, Frances K Shepherd, Clayton K Mickelson, Jessica K Fiege, Beth K Thielen, Lauren M Pross, Autumn E Sanders, Jason S Mitchell, Mason Robertson, Brian T Fife and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Intrinsic OASL expression governs heterogeneity in interferon induction during influenza A virus infection.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. SomaticiScience · 2025
    Article
  14. Phospholipid scramblase 1: a frontline defense against viral infections.Frontiers in cellular and infection microbiology · 2025
    Review
  15. Interplay between respiratory viruses and cilia in the airways.European respiratory review : an official journal of the European Respiratory Society · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Shanley N Roach *Department of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0002-4186-0846
Frances K Shepherd *Department of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0002-9792-5805
Clayton K Mickelson *Department of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0002-5418-412X
Jessica K FiegeDepartment of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455.
Beth K ThielenDivision of Pediatric Infectious Diseases and Immunology, Department of Pediatrics, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0001-5922-0241
Lauren M ProssDepartment of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455.ORCID 0009-0007-5974-3502
Autumn E SandersDepartment of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0002-5522-2490
Jason S MitchellCenter for Immunology, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0002-4669-9481
Mason RobertsonDepartment of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455.
Brian T FifeCenter for Immunology, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0001-9826-5637
Ryan A LangloisDepartment of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0002-0515-571X

Funding

Type I interferons in tolerance in the steady stateP01AI035296 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HOGQUIST, KRISTIN A. · 1993 to 2023
$31.1M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00017 · NIAID · EMORY UNIVERSITY · PI LOWEN, ANICE · 2021 to 2025
$27.3M
TRAINING-PULMONARY CELL &MOLECULAR BIOLOGY &PHYSIOLOGYT32HL007741 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DUDLEY, R. ADAMS, INGBAR, DAVID H · 1994 to 2023
$13.9M
Identifying and preventing antigen specific T cells in diabetesR01AI156276 · NIAID · UNIVERSITY OF MINNESOTA · PI FIFE, BRIAN T · 2021 to 2025
$3.0M
Early Responses to Influenza A Virus Replication In VivoR01AI148669 · NIAID · UNIVERSITY OF MINNESOTA · PI LANGLOIS, RYAN · 2020 to 2024
$2.5M
HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL007741HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI148669NHLBI NIH HHS T32 HL007741NIAID NIH HHS 75N93021C00017NIAID NIH HHS P01 AI035296NIAID NIH HHS R01 AI148669NIAID NIH HHS R01 AI156276
6 · The paper itself

Abstract

Influenza viruses pose a significant burden on global human health. Influenza has a broad cellular tropism in the airway, but how infection of different epithelial cell types impacts replication kinetics and burden in the airways is not fully understood. Using primary human airway cultures, which recapitulate the diverse epithelial cell landscape of the human airways, we investigated the impact of cell type composition on virus tropism and replication kinetics. Cultures were highly diverse across multiple donors and 30 independent differentiation conditions and supported a range of influenza replication. Although many cell types were susceptible to influenza, ciliated and secretory cells were predominantly infected. Despite the strong tropism preference for secretory and ciliated cells, which consistently make up 75% or more of infected cells, only ciliated cells were associated with increased virus production. Surprisingly, infected secretory cells were associated with overall reduced virus output. The disparate response and contribution to influenza virus production could be due to different pro- and antiviral interferon-stimulated gene signatures between ciliated and secretory populations, which were interrogated with single-cell RNA sequencing. These data highlight the heterogeneous outcomes of influenza virus infections in the complex cellular environment of the human airway and the disparate impacts of infected cell identity on multiround burst size, even among preferentially infected cell types.

Indexed as

Epithelial CellsInfluenza, HumanViral TropismVirus ReplicationCells, CulturedCiliaHumansRespiratory Mucosainfluenza virusprimary airway cellsvirus tropism

Identifiers

PMID39008691
PMCPMC11295045

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.