Evidence map›Paper›PMID 39009687›Full record

ArticleNature communications2024

Native mass spectrometry and structural studies reveal modulation of MsbA-nucleotide interactions by lipids.

Tianqi Zhang, Jixing Lyu, Bowei Yang, Sangho D Yun, Elena Scott, Minglei Zhao, Arthur Laganowsky

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Bacterial cell envelope-targeting antibiotics.Nature reviews. Microbiology · 2026
    Review
  2. Molecular Basis for the Activation ofJournal of the American Chemical Society · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tianqi ZhangDepartment of Chemistry, Texas A&M University, College Station, TX, USA.
Jixing LyuDepartment of Chemistry, Texas A&M University, College Station, TX, USA.
Bowei YangDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Sangho D YunDepartment of Chemistry, Texas A&M University, College Station, TX, USA.
Elena ScottDepartment of Chemistry, Texas A&M University, College Station, TX, USA.
Minglei ZhaoDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.ORCID 0000-0001-5832-6060
Arthur LaganowskyDepartment of Chemistry, Texas A&M University, College Station, TX, USA. ALaganowsky@chem.tamu.edu.ORCID 0000-0001-5012-5547

Funding

Understanding the role of lipids in structure and function of membrane proteinsRM1GM145416 · NIGMS · TEXAS A&M UNIVERSITY · PI Erin S Baker, Arthur D Laganowsky · 2022 to 2026
$7.4M
Structural and Functional Studies of Molecular Machines Involved in Chemical Modifications of MacromoleculesR35GM143052 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHAO, MINGLEI · 2021 to 2025
$2.1M
Beagle-3: A Shared GPU Cluster for Biomolecular SciencesS10OD028655 · OD · UNIVERSITY OF CHICAGO · PI ROUX, BENOIT · 2020 to 2020
$2.0M
Development of high resolution mobility measurements for structural biologyR01GM121751 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI CLEMMER, DAVID E., LAGANOWSKY, ARTHUR D · 2017 to 2020
$1.7M
Innovative Native Ion Mobility Approaches for Transformational Measurements in Structural BiologyR01GM138863 · NIGMS · TEXAS A&M UNIVERSITY · PI CLOWERS, BRIAN, LAGANOWSKY, ARTHUR D · 2020 to 2023
$1.2M
Developing new tools to probe membrane protein-lipid interactions for biomedical applicationsR01GM139876 · NIGMS · TEXAS A&M UNIVERSITY · PI LAGANOWSKY, ARTHUR D · 2021 to 2024
$1.2M
NIGMS NIH HHS R01 GM121751NIGMS NIH HHS R01 GM138863NIGMS NIH HHS R01 GM139876NIGMS NIH HHS R35 GM143052NIGMS NIH HHS RM1 GM145416NIH HHS S10 OD028655U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM121751, R01GM139876, R01GM138863, and RM1GM145416U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM143052
6 · The paper itself

Abstract

The ATP-binding cassette (ABC) transporter, MsbA, plays a pivotal role in lipopolysaccharide (LPS) biogenesis by facilitating the transport of the LPS precursor lipooligosaccharide (LOS) from the cytoplasmic to the periplasmic leaflet of the inner membrane. Despite multiple studies shedding light on MsbA, the role of lipids in modulating MsbA-nucleotide interactions remains poorly understood. Here we use native mass spectrometry (MS) to investigate and resolve nucleotide and lipid binding to MsbA, demonstrating that the transporter has a higher affinity for adenosine 5'-diphosphate (ADP). Moreover, native MS shows the LPS-precursor 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)

Indexed as

Adenosine DiphosphateAdenosine TriphosphateATP-Binding Cassette TransportersMass SpectrometryBacterial ProteinsCrystallography, X-RayEscherichia coliLipid ALipidsLipopolysaccharidesModels, MolecularProtein BindingProtein ConformationAdenosine DiphosphateAdenosine TriphosphateATP-Binding Cassette TransportersBacterial ProteinsLipid ALipidsLipopolysaccharidesMsbA protein, Bacteria

Identifiers

PMID39009687
PMCPMC11251056

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.