Evidence map›Paper›PMID 39016322›Full record

ArticleRNA biology2024

Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1.

Guennadi Kozlov, Jianning Jiang, Tyler Rutherford, Anne M Noronha, Christopher J Wilds, Kalle Gehring

Abstract read
In one paragraph

Article in RNA biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Conserved Functions of LARP1 Proteins in Eukaryotes.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Guennadi KozlovDepartment of Biochemistry, McGill University, Montréal, Quebec, Canada.
Jianning JiangDepartment of Biochemistry, McGill University, Montréal, Quebec, Canada.
Tyler RutherfordDepartment of Chemistry and Biochemistry, Concordia University, Montréal, Quebec, Canada.
Anne M NoronhaDepartment of Chemistry and Biochemistry, Concordia University, Montréal, Quebec, Canada.
Christopher J WildsDepartment of Chemistry and Biochemistry, Concordia University, Montréal, Quebec, Canada.
Kalle GehringDepartment of Biochemistry, McGill University, Montréal, Quebec, Canada.ORCID 0000-0001-6500-1184

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI ROSE, ROBERT C · 1985 to 2011
$23.8M
NCRR NIH HHS P41 RR001646NIGMS NIH HHS DMR-0225180
6 · The paper itself

Abstract

La-related proteins (LARPs) are a family of RNA-binding proteins that share a conserved La motif (LaM) domain. LARP1 plays a role in regulating ribosomal protein synthesis and stabilizing mRNAs and has a unique structure without an RNA binding RRM domain adjoining the LaM domain. In this study, we investigated the physical basis for LARP1 specificity for poly(A) sequences and observed an unexpected bias for sequences with single guanines. Multiple guanine substitutions did not increase the affinity, demonstrating preferential recognition of singly guanylated sequences. We also observed that the cyclic di-nucleotides in the cCAS/STING pathway, cyclic-di-GMP and 3',3'-cGAMP, bound with sub-micromolar affinity. Isothermal titration measurements were complemented by high-resolution crystal structures of the LARP1 LaM with six different RNA ligands, including two stereoisomers of a phosphorothioate linkage. The selectivity for singly substituted poly(A) sequences suggests LARP1 may play a role in the stabilizing effect of poly(A) tail guanylation. [Figure: see text].

Indexed as

Poly AProtein BindingRibonucleoproteinsSS-B AntigenAutoantigensBinding SitesCrystallography, X-RayCyclic GMPHumansModels, MolecularProtein DomainsRNA, MessengerAutoantigensbis(3',5')-cyclic diguanylic acidCyclic GMPPoly ARibonucleoproteinsRNA, MessengerSS-B AntigenguanylationLaM, La motifLARP1, La-related protein 1LARP, La-related proteinphosphorothioatepoly(a) tail

Identifiers

PMID39016322
PMCPMC11259064

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.