Evidence mapPaperPMID 39021677Full record

ArticleFrontiers in genetics2024

Key co-expressed genes correlated with blood serum parameters of pigs fed with different fatty acid profile diets.

Simara Larissa Fanalli, Júlia Dezen Gomes, Francisco José de Novais, Izally Carvalho Gervásio, Heidge Fukumasu, Gabriel Costa Monteiro Moreira, Luiz Lehmann Coutinho, James Koltes, Andreia J Amaral, Aline Silva Mello Cesar

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Article in Frontiers in genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Simara Larissa FanalliFaculty of Animal Science and Food Engineering, (FZEA), University of São Paulo, SãoPaulo, Brazil.
Júlia Dezen GomesDepartment of Animal Science, Luiz de Queiroz College of Agriculture, University of São Paulo (USP), Piracicaba, Brazil.
Francisco José de NovaisDepartment of Agricultural, Food & Nutritional Science, Faculty of Agricultural, Life and Environmental Science, University of Alberta, Edmonton, AB, Canada.
Izally Carvalho GervásioDepartment of Animal Science, Luiz de Queiroz College of Agriculture, University of São Paulo (USP), Piracicaba, Brazil.
Heidge FukumasuFaculty of Animal Science and Food Engineering, (FZEA), University of São Paulo, SãoPaulo, Brazil.
Gabriel Costa Monteiro MoreiraINRAE, AgroParisTech, BREED, Université Paris Saclay, Jouy-en-Josas, France.
Luiz Lehmann CoutinhoDepartment of Animal Science, Luiz de Queiroz College of Agriculture, University of São Paulo (USP), Piracicaba, Brazil.
James KoltesAnimal Science Department, Iowa State University, Ames, IA, United States.
Andreia J AmaralMediterranean Institute for Agriculture, Environment and Development (MED), Évora, Portugal.
Aline Silva Mello CesarFaculty of Animal Science and Food Engineering, (FZEA), University of São Paulo, SãoPaulo, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study investigated how gene expression is affected by dietary fatty acids (FA) by using pigs as a reliable model for studying human diseases that involve lipid metabolism. This includes changes in FA composition in the liver, blood serum parameters and overall metabolic pathways. RNA-Seq data from 32 pigs were analyzed using Weighted Gene Co-expression Network Analysis (WGCNA). Our aim was to identify changes in blood serum parameters and gene expression between diets containing 3% soybean oil (SOY3.0) and a standard pig production diet containing 1.5% soybean oil (SOY1.5). Significantly, both the SOY1.5 and SOY3.0 groups showed significant modules, with a higher number of co-expressed modules identified in the SOY3.0 group. Correlated modules and specific features were identified, including enriched terms and pathways such as the histone acetyltransferase complex, type I diabetes mellitus pathway, cholesterol metabolism, and metabolic pathways in SOY1.5, and pathways related to neurodegeneration and Alzheimer's disease in SOY3.0. The variation in co-expression observed for HDL in the groups analyzed suggests different regulatory patterns in response to the higher concentration of soybean oil. Key genes co-expressed with metabolic processes indicative of diseases such as Alzheimer's was also identified, as well as genes related to lipid transport and energy metabolism, including

Indexed as

co-expressionimmune responselipid metabolismRNA-seqsoybean oilsystems biologytranscriptomeWGCNA

Identifiers

PMID39021677
PMCPMC11252010

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.