Evidence map›Paper›PMID 39032490›Full record

ArticleMolecular cell2024

Cytoplasmic binding partners of the Integrator endonuclease INTS11 and its paralog CPSF73 are required for their nuclear function.

Min-Han Lin, Madeline K Jensen, Nathan D Elrod, Hsu-Feng Chu, MaryClaire Haseley, Alissa C Beam, Kai-Lieh Huang, Wesley Chiang, William K Russell, Kelsey Williams and 3 more

Abstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Min-Han LinDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Madeline K JensenDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch, Galveston, TX 77550, USA.
Nathan D ElrodDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch, Galveston, TX 77550, USA.
Hsu-Feng ChuDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
MaryClaire HaseleyDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA.
Alissa C BeamDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA.
Kai-Lieh HuangDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch, Galveston, TX 77550, USA.
Wesley ChiangDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA.
William K RussellDepartment of Biochemistry and Molecular Biology, The University of Texas Medical Branch, Galveston, TX 77550, USA.
Kelsey WilliamsDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA; Department of Biomedical Genetics, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA.
Christoph PröschelDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA; Department of Biomedical Genetics, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA.
Eric J WagnerDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch, Galveston, TX 77550, USA. Electronic address: eric_wagner@urmc.rochester.edu.
Liang TongDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA. Electronic address: ltong@columbia.edu.

Funding

Structural and functional studies of mRNA processing, stability and quality controlR35GM118093 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIANG TONG · 2016 to 2026
$8.5M
Probing the specificity and activity of the metazoan Integrator complexR01GM134539 · NIGMS · HARVARD MEDICAL SCHOOL · PI Karen L Adelman, ERIC J WAGNER · 2019 to 2026
$4.7M
Training in Wellness and Resiliency at the University of Rochester Medical Center and College of Arts, Sciences & EngineeringT32GM135134 · NIGMS · UNIVERSITY OF ROCHESTER · PI Jeffrey J Hayes, Lynne E Maquat · 2020 to 2026
$2.9M
Probing the Role of Integrator in Neuronal FunctionR01NS135070 · NINDS · UNIVERSITY OF ROCHESTER · PI CHRISTOPH PROSCHEL, LIANG TONG · 2023 to 2026
$2.6M
Characterization of the Integrator-Z3 module as a regulator of neuronal differentiationF31NS139499 · NINDS · UNIVERSITY OF ROCHESTER · PI MaryClaire Haseley · 2024 to 2026
$149k
Identification and structural basis of a potential licensing factor of the Integrator cleavage moduleF31CA284555 · NCI · UNIVERSITY OF ROCHESTER · PI WASHBURN, MADELINE K · 2024 to 2025
$77k
NCI NIH HHS F31 CA284555NIGMS NIH HHS R01 GM134539NIGMS NIH HHS R35 GM118093NIGMS NIH HHS T32 GM135134NINDS NIH HHS F31 NS139499NINDS NIH HHS R01 NS135070
6 · The paper itself

Abstract

INTS11 and CPSF73 are metal-dependent endonucleases for Integrator and pre-mRNA 3'-end processing, respectively. Here, we show that the INTS11 binding partner BRAT1/CG7044, a factor important for neuronal fitness, stabilizes INTS11 in the cytoplasm and is required for Integrator function in the nucleus. Loss of BRAT1 in neural organoids leads to transcriptomic disruption and precocious expression of neurogenesis-driving transcription factors. The structures of the human INTS9-INTS11-BRAT1 and Drosophila dIntS11-CG7044 complexes reveal that the conserved C terminus of BRAT1/CG7044 is captured in the active site of INTS11, with a cysteine residue directly coordinating the metal ions. Inspired by these observations, we find that UBE3D is a binding partner for CPSF73, and UBE3D likely also uses a conserved cysteine residue to directly coordinate the active site metal ions. Our studies have revealed binding partners for INTS11 and CPSF73 that behave like cytoplasmic chaperones with a conserved impact on the nuclear functions of these enzymes.

Indexed as

Cell NucleusCytoplasmDrosophila ProteinsProtein BindingAnimalsCatalytic DomainCleavage And Polyadenylation Specificity FactorDrosophila melanogasterEndonucleasesHEK293 CellsHumansNeurogenesisUbiquitin-Protein LigasesCleavage And Polyadenylation Specificity FactorDrosophila ProteinsEndonucleasesUbiquitin-Protein Ligases3′-end processingchaperoneendonucleaseIntegratortranscription termination

Identifiers

PMID39032490
PMCPMC11316654

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.