Evidence map›Paper›PMID 39037544›Full record

ArticleFunctional & integrative genomics2024

Intelligent mutation based evolutionary optimization algorithm for genomics and precision medicine.

Shailendra Pratap Singh, Dileep Kumar Yadav, Mohammad Kazem Chamran, Darshika G Perera

Abstract readLetter
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In one paragraph

Article in Functional & integrative genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Shailendra Pratap SinghSCSET, Bennett University, Greater Noida, UP, India.
Dileep Kumar YadavSCSET, Bennett University, Greater Noida, UP, India. dileep252000@gmail.com.
Mohammad Kazem ChamranFIT, City University, Petaling Jaya, Malaysia.
Darshika G PereraDepartment of Electrical & Computer Engineering, University of Colorado Colorado Springs, Colorado Springs, CO, 80918, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this paper, genomics and precision medicine have witnessed remarkable progress with the advent of high-throughput sequencing technologies and advances in data analytics. However, because of the data's great dimensionality and complexity, the processing and interpretation of large-scale genomic data present major challenges. In order to overcome these difficulties, this research suggests a novel Intelligent Mutation-Based Evolutionary Optimization Algorithm (IMBOA) created particularly for applications in genomics and precision medicine. In the proposed IMBOA, the mutation operator is guided by genome-based information, allowing for the introduction of variants in candidate solutions that are consistent with known biological processes. The algorithm's combination of Differential Evolution with this intelligent mutation mechanism enables effective exploration and exploitation of the solution space. Applying a domain-specific fitness function, the system evaluates potential solutions for each generation based on genomic correctness and fitness. The fitness function directs the search toward ideal solutions that achieve the problem's objectives, while the genome accuracy measure assures that the solutions have physiologically relevant genomic properties. This work demonstrates extensive tests on diverse genomics datasets, including genotype-phenotype association studies and predictive modeling tasks in precision medicine, to verify the accuracy of the proposed approach. The results demonstrate that, in terms of precision, convergence rate, mean error, standard deviation, prediction, and fitness cost of physiologically important genomic biomarkers, the IMBOA consistently outperforms other cutting-edge optimization methods.

Indexed as

AlgorithmsGenomicsMutationPrecision MedicineEvolution, MolecularHumansCancer precisionEvolutionary algorithmsGenome data setsIntelligent mutation

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.