Evidence map›Paper›PMID 39043393›Full record

ArticleEmerging infectious diseases2024

Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus below the Subgroup Level.

Stephanie Goya, Christopher Ruis, Richard A Neher, Adam Meijer, Ammar Aziz, Angie S Hinrichs, Anne von Gottberg, Cornelius Roemer, Daniel G Amoako, Dolores Acuña and 16 more

Abstract read
In one paragraph

Article in Emerging infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Stephanie Goya
Christopher Ruis
Richard A Neher
Adam Meijer
Ammar Aziz
Angie S Hinrichs
Anne von Gottberg
Cornelius Roemer
Daniel G Amoako
Dolores Acuña
Jakob McBroome
James R Otieno
Jinal N Bhiman
Josie Everatt
Juan C Muñoz-Escalante
Kaat Ramaekers
Kate Duggan
Lance D Presser
Laura Urbanska
Marietjie Venter
Nicole Wolter
Teresa C T Peret
Vahid Salimi
Varsha Potdar
Vítor Borges
Mariana Viegas

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A globally implemented unified phylogenetic classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. We formulated global consensus of HRSV classification on the basis of the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality curated dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to GenBank and GISAID (https://www.gisaid.org) public sequence databases through March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B and provided guidelines for defining prospective lineages. Our classification demonstrated robustness in its applicability to both complete and partial genomes. We envision that this unified HRSV classification proposal will strengthen HRSV molecular epidemiology on a global scale.

Indexed as

Genome, ViralPhylogenyRespiratory Syncytial Virus, HumanRespiratory Syncytial Virus InfectionsHumansclassificationepidemiologyevolutionFGgenomegenotypeglycoproteinHRSVlineageorthopneumovirusphylogenyrespiratory infectionsrespiratory syncytial virusRSVsurveillance

Identifiers

PMID39043393
PMCPMC11286072

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.