Evidence map›Paper›PMID 39051373›Full record

ArticleNon-coding RNA2024

Expression of Transposable Elements throughout the

Elizaveta K Skalon, Nick V Panyushev, Olga I Podgornaya, Anastasia R Smolyaninova, Anna I Solovyeva

Abstract read
In one paragraph

Article in Non-coding RNA, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Elizaveta K SkalonZoological Institute, Russian Academy of Sciences, 199034 St. Petersburg, Russia.
Nick V PanyushevBioinformatics Institute, 197342 St. Petersburg, Russia.ORCID 0000-0002-6350-2564
Olga I PodgornayaInstitute of Cytology, Russian Academy of Sciences, 194064 St. Petersburg, Russia.ORCID 0000-0001-5065-5783
Anastasia R SmolyaninovaInstitute of Cytology, Russian Academy of Sciences, 194064 St. Petersburg, Russia.
Anna I SolovyevaZoological Institute, Russian Academy of Sciences, 199034 St. Petersburg, Russia.ORCID 0000-0002-1663-7706

Funding

Research program of Institute of Cytology RAS АААА-А19-119020190091-5Russian Science Foundation №19-74-20102Russian Science Foundation № 23-74-01060
6 · The paper itself

Abstract

backgroundTransposable elements (TEs) are major components of eukaryotic genomes. The extensive body of evidence suggests that although they were once considered "genomic parasites", transposons and their transcripts perform specific functions, such as regulation of early embryo development. Understanding the role of TEs in such parasites as trematodes is becoming critically important.

methodsWe summarized the data regarding the repetitive elements in

resultsDifferential expression analysis revealed stage-specific TE transcription patterns, notably peaking during egg and metacercariae stages. Some TEs showed homology with known lncRNAs and contained putative transcription factor binding sites. Interestingly, TE transcription levels were highest in eggs and metacercariae compared to adults, suggesting regulatory roles in trematode life cycle transitions.

conclusionsThese findings suggest that TEs may play roles in regulating trematode life cycle transitions. Moreover, TE homology with lncRNAs underscores their significance in gene regulation.

Indexed as

Fasciola hepatica life cyclelong non-coding RNARNA-seq analysistransposable elements

Identifiers

PMID39051373
PMCPMC11270206

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.