Evidence map›Paper›PMID 39058093›Full record

ArticlemSystems2024

Mobile genetic elements define the non-random structure of the

Arancha Peñil-Celis, Kaitlin A Tagg, Hattie E Webb, Santiago Redondo-Salvo, Louise Francois Watkins, Luis Vielva, Chelsey Griffin, Justin Y Kim, Jason P Folster, M Pilar Garcillan-Barcia and 1 more

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Comparative genomics ofVirulence · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Arancha Peñil-Celis *Instituto de Biomedicina y Biotecnología de Cantabria, (CSIC, Universidad de Cantabria), Santander, Spain.ORCID 0000-0003-2295-1563
Kaitlin A Tagg *Division of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Hattie E WebbDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.ORCID 0000-0002-1190-7930
Santiago Redondo-SalvoInstituto de Biomedicina y Biotecnología de Cantabria, (CSIC, Universidad de Cantabria), Santander, Spain.
Louise Francois WatkinsDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Luis VielvaDepartamento de Ingeniería de las Comunicaciones, Universidad de Cantabria, Santander, Spain.
Chelsey GriffinDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Justin Y KimDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Jason P FolsterDivision of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.ORCID 0000-0001-8514-5118
M Pilar Garcillan-BarciaInstituto de Biomedicina y Biotecnología de Cantabria, (CSIC, Universidad de Cantabria), Santander, Spain.ORCID 0000-0001-7058-5428
Fernando de la CruzInstituto de Biomedicina y Biotecnología de Cantabria, (CSIC, Universidad de Cantabria), Santander, Spain.ORCID 0000-0003-4758-6857

Funding

HHS | Centers for Disease Control and Prevention (CDC) Contracts No. 75D30119C06679 and 75D30121C11978Ministerio de Ciencia e Innovación (MCIN) PID2020-117923GB-I00 MCIN/AEI/10.13039/501100011033Ministerio de Economía y Competitividad (MEC) DI-17-09164
6 · The paper itself

Abstract

Bacterial relatedness measured using select chromosomal loci forms the basis of public health genomic surveillance. While approximating vertical evolution through this approach has proven exceptionally valuable for understanding pathogen dynamics, it excludes a fundamental dimension of bacterial evolution-horizontal gene transfer. Incorporating the accessory genome is the logical remediation and has recently shown promise in expanding epidemiological resolution for enteric pathogens. Employing

Indexed as

Genome, BacterialInterspersed Repetitive SequencesSalmonella typhiEvolution, MolecularHumansPhylogenyPlasmidsTyphoid Feverantimicrobial resistancepangenomeplasmidsSalmonella Typhi

Identifiers

PMID39058093
PMCPMC11334464

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.