Evidence map›Paper›PMID 39060228›Full record

ArticleNature communications2024

Single cell transcriptomic profiling identifies tumor-acquired and therapy-resistant cell states in pediatric rhabdomyosarcoma.

Sara G Danielli, Yun Wei, Michael A Dyer, Elizabeth Stewart, Heather Sheppard, Marco Wachtel, Beat W Schäfer, Anand G Patel, David M Langenau

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sara G Danielli *Department of Oncology and Children's Research Center, University Children's Hospital of Zurich, Zürich, Switzerland.ORCID 0000-0003-3101-3114
Yun Wei *Molecular Pathology Unit, Massachusetts General Research Institute, Charlestown, MA, USA.
Michael A DyerDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-4027-4850
Elizabeth StewartDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-8005-0427
Heather SheppardDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-9623-2812
Marco WachtelDepartment of Oncology and Children's Research Center, University Children's Hospital of Zurich, Zürich, Switzerland. marco.wachtel@kispi.uzh.ch.ORCID 0000-0002-6077-3692
Beat W SchäferDepartment of Oncology and Children's Research Center, University Children's Hospital of Zurich, Zürich, Switzerland. beat.schaefer@kispi.uzh.ch.ORCID 0000-0001-5988-2915
Anand G PatelDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA. anand.patel2@stjude.org.ORCID 0000-0002-1438-8275
David M LangenauMolecular Pathology Unit, Massachusetts General Research Institute, Charlestown, MA, USA. dlangenau@mgh.harvard.edu.ORCID 0000-0001-6664-8318

Funding

Oncogenic Drivers of Rhabdomyosarcoma Cell State, Cancer Stem Cells and MetastasisR01CA269213 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI David Michael Langenau · 2023 to 2026
$2.4M
Chromatin regulators of stemness and therapy resistance in rhabdomyosarcomaR00CA278696 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Yun Wei · 2025 to 2026
$482k
Chromatin regulators of stemness and therapy resistance in rhabdomyosarcomaK99CA278696 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WEI, YUN · 2023 to 2024
$356k
Damon Runyon Cancer Research Foundation (Cancer Research Fund of the Damon Runyon-Walter Winchell Foundation) DRSG-33P-20NCI NIH HHS R00 CA278696NCI NIH HHS R01 CA269213Sarcoma Foundation of America (Sarcoma Foundation of America, Inc.) 2022 SFA 13-22U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) K99CA278696U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA269213, R01CA276116, U54CA231630
6 · The paper itself

Abstract

Rhabdomyosarcoma (RMS) is a pediatric tumor that resembles undifferentiated muscle cells; yet the extent to which cell state heterogeneity is shared with human development has not been described. Using single-cell/nucleus RNA sequencing from patient tumors, patient-derived xenografts, primary in vitro cultures, and cell lines, we identify four dominant muscle-lineage cell states: progenitor, proliferative, differentiated, and ground cells. We stratify these RMS cells/nuclei along the continuum of human muscle development and show that they share expression patterns with fetal/embryonal myogenic precursors rather than postnatal satellite cells. Fusion-negative RMS (FN-RMS) have a discrete stem cell hierarchy that recapitulates fetal muscle development and contain therapy-resistant FN-RMS progenitors that share transcriptomic similarity with bipotent skeletal mesenchymal cells. Fusion-positive RMS have tumor-acquired cells states, including a neuronal cell state, that are not found in myogenic development. This work identifies previously underappreciated cell state heterogeneity including unique treatment-resistant and tumor-acquired cell states that differ across RMS subtypes.

Indexed as

Gene Expression ProfilingRhabdomyosarcomaSingle-Cell AnalysisTranscriptomeAnimalsCell DifferentiationCell Line, TumorChildDrug Resistance, NeoplasmGene Expression Regulation, NeoplasticHumansMiceMuscle Development

Identifiers

PMID39060228
PMCPMC11282092

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.