Evidence map›Paper›PMID 39062519›Full record

ArticleBiomolecules2024

Amino-Acid Characteristics in Protein Native State Structures.

Tatjana Škrbić, Achille Giacometti, Trinh X Hoang, Amos Maritan, Jayanth R Banavar

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Biomolecules, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tatjana ŠkrbićDepartment of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Campus Scientifico, Via Torino 155, 30170 Venice Mestre, Italy.ORCID 0000-0002-8947-8216
Achille GiacomettiDepartment of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Campus Scientifico, Via Torino 155, 30170 Venice Mestre, Italy.
Trinh X HoangInstitute of Physics, Vietnam Academy of Science and Technology, 10 DaoTan, Ba Dinh, Hanoi 11108, Vietnam.ORCID 0000-0002-2672-562X
Amos MaritanDepartment of Physics and Astronomy, University of Padua, Via Marzolo 8, 35131 Padua, Italy.
Jayanth R BanavarDepartment of Physics and Institute for Fundamental Science, University of Oregon, Eugene, OR 97403, USA.

Funding

Knight Chair at the University of Oregon no grant numberMarie Skłodowska-Curie Grant 894784PRIN-COFIN 2022JWAF7YThe Vietnam Academy of Science and Technology NVCC05.02/24-25
6 · The paper itself

Abstract

The molecular machines of life, proteins, are made up of twenty kinds of amino acids, each with distinctive side chains. We present a geometrical analysis of the protrusion statistics of side chains in more than 4000 high-resolution protein structures. We employ a coarse-grained representation of the protein backbone viewed as a linear chain of C

Indexed as

Amino AcidsProteinsModels, MolecularProtein ConformationProtein FoldingAmino AcidsProteinsamino-acid classeslocal Frenet framepre-sculpted landscapeside-chain protrusion

Identifiers

PMID39062519
PMCPMC11274641

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.