Evidence map›Paper›PMID 39062792›Full record

ArticleInternational journal of molecular sciences2024

Identification and Functional Analysis of circRNAs during Goat Follicular Development.

Jie Liu, Conghui Guo, Junjie Fu, Dewu Liu, Guangbin Liu, Baoli Sun, Ming Deng, Yongqing Guo, Yaokun Li

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Advances in Engineering Circular RNA Vaccines.Pathogens (Basel, Switzerland) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jie LiuCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Conghui GuoCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Junjie FuCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Dewu LiuCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Guangbin LiuCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.ORCID 0000-0002-1156-7921
Baoli SunCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Ming DengCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Yongqing GuoCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.ORCID 0000-0002-0518-1766
Yaokun LiCollege of Animal Science, South China Agricultural University, Guangzhou 510642, China.ORCID 0000-0002-9211-0244

Funding

Guangdong Provincial Department of Agriculture and Rural Affairs Project 2022-XPY-00-009Technology Commissioner Team of Guangdong & Guangxi Cooperation E230257The Operation, Maintenance and Evaluation of Livestock and Poultry Germplasm Resource Bank of Guangdong Province 2023-XBH-00-004
6 · The paper itself

Abstract

Litter size is a crucial quantitative trait in animals, closely linked to follicular development. Circular RNA (circRNA), a type of single-stranded closed-loop endogenous RNA with stable expression, plays pivotal roles in various biological processes, yet its function in goat follicular development remains unclear. In this study, we collected large (follicle diameter > 3 mm) and small (1 mm < follicle diameter < 3 mm) follicles from black goats in the Chuanzhong region for circRNA sequencing, with the aim of elucidating the functional circRNAs that influence follicle development in goats. Differential analysis revealed that 17 circRNAs were upregulated in large follicles, and 28 circRNAs were upregulated in small follicles. Functional enrichment analysis revealed significant enrichment of pathways related to reproduction, including cellular response to follicle-stimulating hormone stimulus, the PI3K-Akt signaling pathway, the MAPK signaling pathway, and the Notch signaling pathway. Based on the ceRNA mechanism, 45 differentially expressed circRNAs were found to target and bind a total of 418 miRNAs, and an intercalation network including miR-324-3p (circRNA2497, circRNA5650), miR-202-5p (circRNA3333, circRNA5501), and miR-493-3p (circRNA4995, circRNA5508) was constructed. In addition, conservation analysis revealed that 2,239 circRNAs were conserved between goats and humans. Prediction of translation potential revealed that 154 circRNAs may potentially utilize both N6-methyladenosine (m6A) and internal ribosome entry site (IRES) translation mechanisms. Furthermore, the differential expression and circularization cleavage sites of five circRNAs were validated through RT-qPCR and DNA sequencing. Our study constructed a circRNA map in goat follicle development, offering a theoretical foundation for enhancing goat reproductive performance.

Indexed as

GoatsOvarian FollicleRNA, CircularAnimalsFemaleGene Expression ProfilingGene Regulatory NetworksMicroRNAsSignal TransductionMicroRNAsRNA, CircularcircRNAfolliclesgoatreproduction

Identifiers

PMID39062792
PMCPMC11277404

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.