Evidence map›Paper›PMID 39091777›Full record

ArticlebioRxiv : the preprint server for biology2024

Genetic and selective constraints on the optimization of gene product diversity.

Daohan Jiang, Nevraj Kejiou, Yi Qiu, Alexander F Palazzo, Matt Pennell

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Daohan JiangDepartment of Quantitative and Computational Biology, University of Southern California, USA.ORCID 0000-0002-3524-9725
Nevraj KejiouDepartment of Biochemistry, University of Toronto, Canada.
Yi QiuDepartment of Biochemistry, University of Toronto, Canada.
Alexander F PalazzoDepartment of Biochemistry, University of Toronto, Canada.
Matt PennellDepartment of Quantitative and Computational Biology, University of Southern California, USA.

Funding

Leveraging phylogenetic approaches to investigate the evolution of geneexpressionR35GM151348 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Matthew Wesley Pennell · 2023 to 2026
$1.6M
NIGMS NIH HHS R35 GM151348
6 · The paper itself

Abstract

RNA and protein expressed from the same gene can have diverse isoforms due to various post-transcriptional and post-translational modifications. For the vast majority of alternative isoforms, It is unknown whether they are adaptive or simply biological noise. As we cannot experimentally probe the function of each isoform, we can ask whether the distribution of isoforms across genes and across species is consistent with expectations from different evolutionary processes. However, there is currently no theoretical framework that can generate such predictions. To address this, we developed a mathematical model where isoform abundances are determined collectively by

Indexed as

constraintevolutionary theorygene product diversityoptimizationpost-transcriptional modification

Identifiers

PMID39091777
PMCPMC11291005

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.