Evidence map›Paper›PMID 39102894›Full record

ArticleThe Journal of infectious diseases2024

Copy Number Variations of Plasmodium vivax DBP1, EBP/DBP2, and RBP2b in Ethiopians Who Are Duffy Positive and Duffy Negative.

Kareen Pestana, Anthony Ford, Rei Rama, Beka Abagero, Daniel Kepple, Junya Tomida, Jean Popovici, Delenasaw Yewhalaw, Eugenia Lo

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Adaptive evolution ofbioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. High prevalence of mixedmedRxiv : the preprint server for health sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kareen PestanaDepartment of Microbiology and Immunology, College of Medicine, Drexel University, Philadelphia, Pennsylvania.ORCID 0000-0001-9775-5378
Anthony FordDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, North Carolina.ORCID 0000-0002-1615-2864
Rei RamaBiological Sciences, University of North Carolina at Charlotte, Charlotte, North Carolina.
Beka AbageroDepartment of Microbiology and Immunology, College of Medicine, Drexel University, Philadelphia, Pennsylvania.ORCID 0000-0002-7205-9496
Daniel KeppleBiological Sciences, University of North Carolina at Charlotte, Charlotte, North Carolina.ORCID 0000-0003-0566-3623
Junya TomidaBiological Sciences, University of North Carolina at Charlotte, Charlotte, North Carolina.ORCID 0000-0002-0813-5757
Jean PopoviciMalaria Molecular Epidemiology Unit, Malaria Translational Research Unit, Institut Pasteur du Cambodge, Institut Pasteur, Phnom Penh, Cambodia.ORCID 0000-0002-3135-1175
Delenasaw YewhalawTropical Infectious Disease Research Center, Jimma University, Jimma, Ethiopia.ORCID 0000-0002-2907-9360
Eugenia LoDepartment of Microbiology and Immunology, College of Medicine, Drexel University, Philadelphia, Pennsylvania.

Funding

Plasmodium vivax Erythrocyte Invasion Mechanisms and Humoral Immune Response in Duffy Negative AfricansR01AI162947 · NIAID · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI Eugenia Lo · 2022 to 2026
$3.4M
Extent, dynamics and mechanisms of Plasmodium vivax immune evasion caused by PvDBP gene amplificationR01AI173171 · NIAID · INSTITUT PASTEUR DU CAMBODGE · PI Eugenia Lo, Jean POPOVICI · 2023 to 2026
$2.4M
NIAID NIH HHS R01 AI162947NIAID NIH HHS R01 AI173171NIH HHS R01 AI162947
6 · The paper itself

Abstract

Recent evidence challenges the belief that individuals who are Duffy-negative are resistant to Plasmodium vivax due to lacking the Duffy antigen receptor for chemokines. Erythrocyte-binding protein (EBP/DBP2) has shown moderate binding to Duffy-negative erythrocytes in vitro. Reticulocyte-binding protein 2b (RBP2b) interactions with transferrin receptor 1 suggest involvement in Duffy-negative infections. Gene copy number variations in PvDBP1, PvEBP/DBP2, and PvRBP2b were investigated in Duffy-positive and Duffy-negative P vivax infections from Ethiopia. Among Duffy-positive samples, 34% displayed PvDBP1 duplications (Cambodian type). In Duffy-negative infections, 30% showed duplications, mostly Cambodian type. For PvEBP/DBP2 and PvRBP2b, Duffy-positive samples exhibited higher duplication rates (1-8 copies for PvEBP/DBP2, 46%; 1-5 copies for PvRBP2b, 43%) as compared with Duffy-negative samples (20.8% and 26%, respectively). The range of copy number variations was lower in Duffy-negative infections. Demographic and clinical factors associated with gene multiplications in both Duffy types were explored, enhancing understanding of P vivax evolution in Africans who are Duffy negative.

Indexed as

DNA Copy Number VariationsDuffy Blood-Group SystemMalaria, VivaxPlasmodium vivaxProtozoan ProteinsReceptors, Cell SurfaceAdolescentAdultAntigens, ProtozoanChildChild, PreschoolEast African PeopleEthiopiaFemaleHumansMaleACKR1 protein, humanAntigens, ProtozoanDuffy Blood-Group SystemMembrane ProteinsProtozoan ProteinsReceptors, Cell Surfacereticulocyte-binding protein, Plasmodium vivaxCNVPlasmodium vivaxPvDBP1PvEBP/DBP2PvRBP2b

Identifiers

PMID39102894
PMCPMC11481331

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.