Evidence map›Paper›PMID 39109985›Full record

ArticlePlant physiology2024

N6-methyladenosine RNA modification regulates photoperiod sensitivity in cotton.

Ying He, Zhanfeng Si, Gaofu Mei, Yu Cheng, Jun Zhang, Tao Jiang, Jiani Chen, Huifang Xiong, Tianzhen Zhang, Yan Hu

Abstract read
In one paragraph

Article in Plant physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Dual Roles of mCells · 2026
    Review
  2. Article
  3. Epigenetic Regulation of Floral Transition.Plants (Basel, Switzerland) · 2025
    Review
  4. Epitranscriptomic reprogramming in response to low COThe Plant journal : for cell and molecular biology · 2025
    Article
  5. The role of NTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ying HeDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.ORCID 0009-0003-2354-9629
Zhanfeng SiDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.ORCID 0000-0002-5876-5503
Gaofu MeiKey Laboratory of Digital Upland Crops of Zhejiang Province, Institute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou 310014, China.ORCID 0000-0002-8966-8503
Yu ChengDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.ORCID 0009-0002-3303-9342
Jun ZhangDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.ORCID 0000-0002-8101-3924
Tao JiangDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.
Jiani ChenDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.ORCID 0009-0008-5908-206X
Huifang XiongDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.ORCID 0009-0001-2250-6788
Tianzhen ZhangDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.ORCID 0000-0001-7873-4547
Yan HuDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.ORCID 0000-0003-1680-8269

Funding

National Natural Science Foundation of China 321702005
6 · The paper itself

Abstract

The methylation of N6-methyladenosine (m6A) involves writers, erasers, and readers, acting synergistically in posttranscriptional regulation. These processes influence various biological processes, including plant floral transition. However, the specific role of m6A modifications in photoperiod sensitivity in cotton (Gossypium hirsutum) remains obscure. To elucidate this, in this study, we conducted transcriptome-wide m6A sequencing during critical flowering transition stages in the photoperiod-sensitive wild G. hirsutum var. yucatanense (yucatanense) and the photoperiod-insensitive cultivated cotton G. hirsutum acc. TM-1 (TM-1). Our results revealed significant variations in m6A methylation of 2 cotton varieties, with yucatanense exhibiting elevated m6A modification levels compared with TM-1 under long-day conditions. Notably, distinct m6A peaks between TM-1 and yucatanense correlated significantly with photoperiod sensitivity. Moreover, our study highlighted the role of the demethylase G. hirsutum ALKB homolog 5 (GhALKBH5) in modulating m6A modification levels. Silencing GhALKBH5 led to a decreased mRNA level of key photoperiodic flowering genes (GhADO3, GhAGL24, and GhFT1), resulting in delayed bud emergence and flowering. Reverse transcription quantitative PCR analyses confirmed that silencing GhADO3 and GhAGL24 significantly downregulated the expression of the floral integrator GhFT1. Collectively, our findings unveiled a transcriptional regulatory mechanism in which GhALKBH5-mediated m6A demethylation of crucial photoperiodic flowering transcripts modulated photoperiod sensitivity in cotton.

Indexed as

AdenosineGossypiumPhotoperiodFlowersGene Expression Regulation, PlantMethylationPlant ProteinsRNA, PlantTranscriptomeAdenosineN-methyladenosinePlant ProteinsRNA, Plant

Identifiers

PMID39109985
PMCPMC11444288

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.