Evidence map›Paper›PMID 39110794›Full record

ArticleScience advances2024

The interferon γ pathway enhances pluripotency and X-chromosome reactivation in iPSC reprogramming.

Mercedes Barrero, Aleksey Lazarenkov, Enrique Blanco, Luis G Palma, Anna V López-Rubio, Moritz Bauer, Anna Bigas, Luciano Di Croce, José Luis Sardina, Bernhard Payer

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Why are imprints unstable in pluripotent stem cells?Biochemical Society transactions · 2025
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Mercedes BarreroCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.ORCID 0000-0001-7178-1885
Aleksey LazarenkovJosep Carreras Leukemia Research Institute (IJC), Badalona 08916, Spain.ORCID 0000-0003-0652-8116
Enrique BlancoCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.ORCID 0000-0001-6261-7370
Luis G PalmaJosep Carreras Leukemia Research Institute (IJC), Badalona 08916, Spain.ORCID 0000-0001-5170-0507
Anna V López-RubioJosep Carreras Leukemia Research Institute (IJC), Badalona 08916, Spain.ORCID 0000-0001-8664-6205
Moritz BauerCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.ORCID 0000-0002-5937-8169
Anna BigasJosep Carreras Leukemia Research Institute (IJC), Badalona 08916, Spain.ORCID 0000-0003-4801-6899
Luciano Di CroceCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.ORCID 0000-0003-3488-6228
José Luis SardinaJosep Carreras Leukemia Research Institute (IJC), Badalona 08916, Spain.ORCID 0000-0002-8493-3937
Bernhard PayerCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.ORCID 0000-0002-4694-2082

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reprogramming somatic cells into induced pluripotent stem cells (iPSCs) requires activation of the pluripotency network and resetting of the epigenome by erasing the epigenetic memory of the somatic state. In female mouse cells, a critical epigenetic reprogramming step is the reactivation of the inactive X chromosome. Despite its importance, a systematic understanding of the regulatory networks linking pluripotency and X-reactivation is missing. Here, we reveal important pathways for pluripotency acquisition and X-reactivation using a genome-wide CRISPR screen during neural precursor to iPSC reprogramming. In particular, we discover that activation of the interferon γ (IFNγ) pathway early during reprogramming accelerates pluripotency acquisition and X-reactivation. IFNγ stimulates STAT3 signaling and the pluripotency network and leads to enhanced TET-mediated DNA demethylation, which consequently boosts X-reactivation. We therefore gain a mechanistic understanding of the role of IFNγ in reprogramming and X-reactivation and provide a comprehensive resource of the molecular networks involved in these processes.

Indexed as

Cellular ReprogrammingInduced Pluripotent Stem CellsInterferon-gammaSignal TransductionAnimalsDNA MethylationEpigenesis, GeneticFemaleMiceSTAT3 Transcription FactorX ChromosomeInterferon-gammaSTAT3 Transcription Factor

Identifiers

PMID39110794
PMCPMC11305397

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.