Evidence map›Paper›PMID 39113648›Full record

ArticleHaematologica2024

Distinctive genomic features of human T-lymphotropic virus type 1-related adult T-cell leukemia-lymphoma in Western populations.

Caroline S Myers, Eli Williams, Carlos Barrionuevo Cornejo, Georgios Pongas, Ngoc L Toomey, Jose A Sanches, Maxime Battistella, Samuel Mo, Melissa Pulitzer, Cristopher A Moskaluk and 19 more

Abstract read
In one paragraph

Article in Haematologica, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
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  8. EntitiesHaematologica · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Caroline S MyersDepartment of Dermatology, Northwestern University Feinberg School of Medicine, Chicago, Illinois.
Eli WilliamsUniversity of Virginia School of Medicine, Charlottesville, Virginia.
Carlos Barrionuevo CornejoInstituto Nacional de Enfermedades Neoplasicas, Lima, Peru.
Georgios PongasUniversity of Miami, Miami, Florida.
Ngoc L ToomeyUniversity of Miami, Miami, Florida.
Jose A SanchesUniversidade de São Paolo, São Paolo.
Maxime BattistellaUniversité de Paris, Paris.
Samuel MoDepartment of Dermatology, Northwestern University Feinberg School of Medicine, Chicago,Illinois.
Melissa PulitzerMemorial Sloan-Kettering Cancer Center, New York, New York, USA; New York-Presbyterian Hospital, New York, New York.
Cristopher A MoskalukUniversity of Virginia School of Medicine, Charlottesville, Virginia.
Govind BhagatNew York-Presbyterian Hospital, New York, New York, USA; Columbia University School of Medicine, New York, New York.
Kenneth OforiColumbia University School of Medicine, New York, New York.
Jonathan J DavickUniversity of Iowa, Iowa City, Iowa.
Octavio ServitjeHospital Universitari de Bellvitge, Barcelona.
Denis MiyashiroUniversidade de São Paolo, São Paolo.
Fina ClimentHospital Universitari de Bellvitge, Barcelona.
Kimberley RingbloomDepartment of Dermatology, Northwestern University Feinberg School of Medicine, Chicago,Illinois.
Daniela DuenasInstituto Nacional de Enfermedades Neoplasicas, Lima, Peru.
Calvin LawDepartment of Dermatology, Northwestern University Feinberg School of Medicine, Chicago,Illinois.
Sandro Casavilca ZambranoInstituto Nacional de Enfermedades Neoplasicas, Lima, Peru.
Luis MalpicaUniversity of Texas MD Anderson Cancer Center, Houston, Texas.
Brady E BeltranHospital Nacional Edgardo Rebagliati Martins, Lima, Peru.
Denisse CastroHospital Nacional Edgardo Rebagliati Martins, Lima, Peru.
Luciana BarretoUniversity of Miami, Miami, Florida, USA; Instituto Nacional de Câncer José Alencar Gomes da Silva, Rio de Janeiro.
Carlos BritesFederal University of Bahia, Salvador.
Jennifer R ChapmanUniversity of Miami, Miami, Florida.
Jaehyuk ChoiDepartment of Dermatology, Northwestern University Feinberg School of Medicine, Chicago,Illinois.
Alejandro A GruUniversity of Virginia School of Medicine, Charlottesville, Virginia. aag2222@cumc.columbia.edu.
Juan C RamosUniversity of Miami, Miami, Florida.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephen D. Nimer · 2019 to 2026
$24.1M
Mechanisms of Lymphomagenesis of Skin Resident Gamma Delta T cellsR01CA260064 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI I. Caroline Le Poole · 2022 to 2026
$2.4M
Epigenetic Targeting of Afro-Caribbean Variant of HTLV-1 Related Adult T-cell Leukemia-lymphomaR01CA223232 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI RAMOS, JUAN CARLOS · 2018 to 2022
$1.7M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA240139NCI NIH HHS R01 CA223232NCI NIH HHS R01 CA260064
6 · The paper itself

Abstract

Adult T-cell leukemia-lymphoma (ATLL) is an aggressive malignancy driven by human T-cell leukemia virus type 1 (HTLV-1). Although patients from the Western hemisphere (Afro-Caribbean and South American) face worse prognoses, our understanding of ATLL molecular drivers derives mostly from Japanese studies. We performed multi-omic analyses to elucidate the genomic landscape of ATLL in Western cohorts. Recurrent deletions and/or damaging mutations involving FOXO3, ANKRD11, DGKZ, and PTPN6 implicate these genes as potential tumor suppressors. RNA-sequencing, published functional data and in vitro assays support the roles of ANKRD11 and FOXO3 as regulators of T-cell proliferation and apoptosis in ATLL, respectively. Survival data suggest that ANKRD11 mutation may confer a worse prognosis. Japanese and Western cohorts, in addition to acute and lymphomatous subtypes, demonstrated distinct molecular patterns. GATA3 deletion was associated with chronic cases with unfavorable outcomes. IRF4 and CARD11 mutations frequently emerged in relapses after interferon therapy. Our findings reveal novel putative ATLL driver genes and clinically relevant differences between Japanese and Western ATLL patients.

Indexed as

Human T-lymphotropic virus 1Leukemia-Lymphoma, Adult T-CellMutationAdultFemaleGenomicsHTLV-I InfectionsHumansMaleMiddle AgedPrognosis

Identifiers

PMID39113648
PMCPMC11609816

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.