Evidence map›Paper›PMID 39117633›Full record

ArticleScientific data2024

Chromosome-level genome assembly and annotation of the Rhabdophis nuchalis (Hubei keelback).

Mingwen Duan, Shijun Yang, Xiufeng Li, Xuemei Tang, Yuqi Cheng, Jingxue Luo, Ji Wang, Huina Song, Qin Wang, Guang Xiang Zhu

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Mingwen Duan *College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
Shijun Yang *College of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
Xiufeng LiCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
Xuemei TangCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
Yuqi ChengChengdu Zoo, Chengdu, Sichuan Province, 610081, China.
Jingxue LuoCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
Ji WangCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
Huina SongCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
Qin WangCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, China.
Guang Xiang ZhuCollege of Life Science, Sichuan Agricultural University, Ya'an, 625014, China. ZhuGX0711@163.com.ORCID 0000-0002-8900-3659

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhabdophis nuchalis, a snake widely distributed in China, possesses a unique trait: glands beneath the skin on its neck and back, known as nucho-dorsal glands. These features make it a valuable subject for studying genetic diversity and the evolution of complex traits. In this study, we obtained a high-quality chromosome-level reference genome of R. nuchalis using MGI short-read sequencing, PacBio Revio long-read sequencing, and Hi-C sequencing techniques. The final assembly comprised 1.92 Gb of the R. nuchalis genome, anchored to 20 chromosomes (including 9 macrochromosomes and 11 microchromosomes), with a contig N50 of 104.79 Mb, a scaffold N50 of 204.96 Mb, and a BUSCO completeness of 97.50%. Additionally, we annotated a total of 1.09 Gb of repetitive sequences (which constitute 56.51% of the entire genome) and identified 22,057 protein-coding genes. This high-quality reference genome of R. nuchalis furnishes essential genomic data for comprehending the genetic diversity and evolutionary history of the species, as well as for facilitating species conservation efforts and comparative genomics studies.

Indexed as

ChromosomesGenomeAnimalsMolecular Sequence AnnotationSnakes

Identifiers

PMID39117633
PMCPMC11310211

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.