Evidence map›Paper›PMID 39118116›Full record

ArticleMicrobial cell factories2024

TetR family regulator AbrT controls lincomycin production and morphological development in Streptomyces lincolnensis.

Yurong Xu, Meng Liu, Ruidong Zhao, Yue Pan, Panpan Wu, Chi Zhang, Xiangying Chi, Buchang Zhang, Hang Wu

Abstract read
In one paragraph

Article in Microbial cell factories, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Structural Characterisation of TetR/AcrR Regulators inInternational journal of molecular sciences · 2025
    Article
  4. Sugar-sensing swodkoreceptors and swodkocrine signaling.Animal models and experimental medicine · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yurong XuDepartment of Chemical and Pharmaceutical Engineering, Hefei Normal University, Hefei, 230601, China. xuyurong89@163.com.
Meng LiuSchool of Life Sciences, Institute of Physical Science and Information Technology, Anhui University, Hefei, 230601, China.
Ruidong ZhaoSchool of Life Sciences, Institute of Physical Science and Information Technology, Anhui University, Hefei, 230601, China.
Yue PanSchool of Life Sciences, Institute of Physical Science and Information Technology, Anhui University, Hefei, 230601, China.
Panpan WuSchool of Life Sciences, Institute of Physical Science and Information Technology, Anhui University, Hefei, 230601, China.
Chi ZhangSchool of Life Sciences, Institute of Physical Science and Information Technology, Anhui University, Hefei, 230601, China.
Xiangying ChiDepartment of Chemical and Pharmaceutical Engineering, Hefei Normal University, Hefei, 230601, China.
Buchang ZhangSchool of Life Sciences, Institute of Physical Science and Information Technology, Anhui University, Hefei, 230601, China.
Hang WuSchool of Life Sciences, Institute of Physical Science and Information Technology, Anhui University, Hefei, 230601, China. wuhang@ahu.edu.cn.

Funding

China Postdoctoral Science Foundation 2023M730010the Anhui Provincial Natural Science Foundation for Excellent Young Scholars 2208085Y09the National Natural Science Foundation of China 32170073the Natural Science Foundation of Hefei Normal University 2023QN09the Natural Science Research Project of Colleges and Universities in Anhui Province 2022AH050063
6 · The paper itself

Abstract

backgroundThe TetR family of transcriptional regulators (TFRs), serving as crucial regulators of diverse cellular processes, undergo conformational changes induced by small-molecule ligands, which either inhibit or activate them to modulate target gene expression. Some ligands of TFRs in actinomycetes and their regulatory effects have been identified and studied; however, regulatory mechanisms of the TetR family in the lincomycin-producing Streptomyces lincolnensis remain poorly understood.

resultsIn this study, we found that AbrT (SLCG_1979), a TetR family regulator, plays a pivotal role in regulating lincomycin production and morphological development in S. lincolnensis. Deletion of abrT gene resulted in increased lincomycin A (Lin-A) production, but delayed mycelium formation and sporulation on solid media. AbrT directly or indirectly repressed the expression of lincomycin biosynthetic (lin) cluster genes and activated that of the morphological developmental genes amfC, whiB, and ftsZ. We demonstrated that AbrT bound to two motifs (5'-CGCGTACTCGTA-3' and 5'-CGTACGATAGCT-3') present in the bidirectional promoter between abrT and SLCG_1980 genes. This consequently repressed abrT itself and its adjacent gene SLCG_1980 that encodes an arabinose efflux permease. D-arabinose, not naturally occurring as L-arabinose, was identified as the effector molecule of AbrT, reducing its binding affinity to abrT-SLCG_1980 intergenic region. Furthermore, based on functional analysis of the AbrT homologue in Saccharopolyspora erythraea, we inferred that the TetR family regulator AbrT may play an important role in regulating secondary metabolism in actinomycetes.

conclusionsAbrT functions as a regulator for governing lincomycin production and morphological development of S. lincolnensis. Our findings demonstrated that D-arabinose acts as a ligand of AbrT to mediate the regulation of lincomycin biosynthesis in S. lincolnensis. Our findings provide novel insights into ligand-mediated regulation in antibiotic biosynthesis.

Indexed as

Bacterial ProteinsGene Expression Regulation, BacterialLincomycinStreptomycesAnti-Bacterial AgentsMultigene FamilyPromoter Regions, GeneticTranscription FactorsAnti-Bacterial AgentsBacterial ProteinsLincomycinTranscription FactorsAntibiotic biosynthesisD-arabinoseLigandStreptomyces lincolnensisTetR family regulator

Identifiers

PMID39118116
PMCPMC11308395

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.