Evidence map›Paper›PMID 39125668›Full record

ArticleInternational journal of molecular sciences2024

Deciphering the Effects of the PYCR Family on Cell Function, Prognostic Value, Immune Infiltration in ccRCC and Pan-Cancer.

Hongquan Chen, Qing Chen, Jinyang Chen, Yazhen Mao, Lidi Duan, Dongjie Ye, Wenxiu Cheng, Jiaxi Chen, Xinrong Gao, Renxi Lin and 3 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. [Research Progress on the Role and Mechanisms of PYCR1 
in Tumorigenesis and Progression].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Hongquan ChenSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.ORCID 0000-0001-5341-9508
Qing ChenSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Jinyang ChenCollege of Computer and Cyber Security, Fujian Normal University, Fuzhou 350009, China.
Yazhen MaoSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Lidi DuanSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Dongjie YeSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Wenxiu ChengSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Jiaxi ChenSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Xinrong GaoSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Renxi LinSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Weibin LinSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Mingfang ZhangSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.
Yuanlin QiSchool of Basic Medical Sciences, Fujian Medical University, Fuzhou 350122, China.ORCID 0000-0002-5253-9732

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pyrroline-5-carboxylate reductase (PYCR) is pivotal in converting pyrroline-5-carboxylate (P5C) to proline, the final step in proline synthesis. Three isoforms, PYCR1, PYCR2, and PYCR3, existed and played significant regulatory roles in tumor initiation and progression. In this study, we first assessed the molecular and immune characteristics of PYCRs by a pan-cancer analysis, especially focusing on their prognostic relevance. Then, a kidney renal clear cell carcinoma (KIRC)-specific prognostic model was established, incorporating pathomics features to enhance predictive capabilities. The biological functions and regulatory mechanisms of PYCR1 and PYCR2 were investigated by in vitro experiments in renal cancer cells. The PYCRs' expressions were elevated in diverse tumors, correlating with unfavorable clinical outcomes. PYCRs were enriched in cancer signaling pathways, significantly correlating with immune cell infiltration, tumor mutation burden (TMB), and microsatellite instability (MSI). In KIRC, a prognostic model based on PYCR1 and PYCR2 was independently validated statistically. Leveraging features from H&E-stained images, a pathomics feature model reliably predicted patient prognosis. In vitro experiments demonstrated that PYCR1 and PYCR2 enhanced the proliferation and migration of renal carcinoma cells by activating the mTOR pathway, at least in part. This study underscores PYCRs' pivotal role in various tumors, positioning them as potential prognostic biomarkers and therapeutic targets, particularly in malignancies like KIRC. The findings emphasize the need for a broader exploration of PYCRs' implications in pan-cancer contexts.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsPyrroline Carboxylate ReductasesBiomarkers, TumorCell Line, TumorCell Proliferationdelta-1-Pyrroline-5-Carboxylate ReductaseGene Expression Regulation, NeoplasticHumansLymphocytes, Tumor-InfiltratingPrognosisSignal TransductionBiomarkers, Tumordelta-1-Pyrroline-5-Carboxylate ReductasePyrroline Carboxylate Reductaseskidney renal clear cell carcinoma (KIRC)mTORpan-cancer analysisPathomicsprognostic modelpyrroline-5-carboxylate reductase (PYCR)

Identifiers

PMID39125668
PMCPMC11311831

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.