Evidence map›Paper›PMID 39127721›Full record

ArticleNature communications2024

OTUD6 deubiquitination of RPS7/eS7 on the free 40 S ribosome regulates global protein translation and stress.

Sammy Villa, Pankaj Dwivedi, Aaron Stahl, Trent Hinkle, Christopher M Rose, Donald S Kirkpatrick, Seth M Tomchik, Vishva M Dixit, Fred W Wolf

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sammy VillaQuantitative and Systems Biology, University of California, Merced, CA, 95343, USA.ORCID 0000-0002-7261-4787
Pankaj DwivediDepartment of Microchemistry, Proteomics, and Lipidomics, Genentech Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.ORCID 0000-0002-7666-9216
Aaron StahlNeuroscience and Pharmacology, University of Iowa, Iowa City, IA, 52242, USA.
Trent HinkleDepartment of Microchemistry, Proteomics, and Lipidomics, Genentech Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.ORCID 0000-0001-9090-2750
Christopher M RoseDepartment of Microchemistry, Proteomics, and Lipidomics, Genentech Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.ORCID 0000-0002-7502-3368
Donald S KirkpatrickDepartment of Microchemistry, Proteomics, and Lipidomics, Genentech Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Seth M TomchikNeuroscience and Pharmacology, University of Iowa, Iowa City, IA, 52242, USA.ORCID 0000-0001-5686-0833
Vishva M DixitDepartment of Physiological Chemistry, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.ORCID 0000-0001-6983-0326
Fred W WolfQuantitative and Systems Biology, University of California, Merced, CA, 95343, USA. fwolf@ucmerced.edu.ORCID 0000-0002-4230-194X

Funding

Dopaminergic circuit modulation of learning and arousal-mediated memory enhancementR01NS114403 · NINDS · UNIVERSITY OF IOWA · PI TOMCHIK, SETH M · 2020 to 2024
$2.0M
Genetic and molecular mechanisms of Nf1-dependent neuronal regulation of metabolismR01NS126361 · NINDS · UNIVERSITY OF IOWA · PI Seth M Tomchik · 2022 to 2026
$2.0M
Mechanisms of compartmentalized plasticity in learning and memoryR01NS124716 · NINDS · UNIVERSITY OF IOWA · PI Seth M Tomchik · 2023 to 2026
$1.5M
Genentech (Genentech, Inc.) n/aNINDS NIH HHS R01 NS114403NINDS NIH HHS R01 NS124716NINDS NIH HHS R01 NS126361U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01NS114403U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01NS124716
6 · The paper itself

Abstract

Ribosomes are regulated by evolutionarily conserved ubiquitination/deubiquitination events. We uncover the role of the deubiquitinase OTUD6 in regulating global protein translation through deubiquitination of the RPS7/eS7 subunit on the free 40 S ribosome in vivo in Drosophila. Coimmunoprecipitation and enrichment of monoubiquitinated proteins from catalytically inactive OTUD6 flies reveal RPS7 as the ribosomal substrate. The 40 S protein RACK1 and E3 ligases CNOT4 and RNF10 function upstream of OTUD6 to regulate alkylation stress. OTUD6 interacts with RPS7 specifically on the free 40 S, and not on 43 S/48 S initiation complexes or the translating ribosome. Global protein translation levels are bidirectionally regulated by OTUD6 protein abundance. OTUD6 protein abundance is physiologically regulated in aging and in response to translational and alkylation stress. Thus, OTUD6 may promote translation initiation, the rate limiting step in protein translation, by titering the amount of 40 S ribosome that recycles.

Indexed as

Drosophila ProteinsProtein BiosynthesisRibosomal ProteinsUbiquitinationAnimalsDrosophila melanogasterRibosomesStress, PhysiologicalUbiquitin-Protein LigasesDrosophila ProteinsRibosomal ProteinsUbiquitin-Protein Ligases

Identifiers

PMID39127721
PMCPMC11316749

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.