Evidence map›Paper›PMID 39128243›Full record

ArticleBioorganic chemistry2024

The utility of Streptococcus mutans undecaprenol kinase for the chemoenzymatic synthesis of diverse non-natural isoprenoids.

Vikas Kumar, Bryce P Johnson, Prashant S Mandal, Daniel R Sheffield, Dustin A Dimas, Riki Das, Sanjay Maity, Mark D Distefano, Shanteri Singh

Abstract read
In one paragraph

Article in Bioorganic chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Vikas KumarDepartment of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Room 1000, Norman, OK 73019, United States.
Bryce P JohnsonDepartment of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Room 1000, Norman, OK 73019, United States.
Prashant S MandalDepartment of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Room 1000, Norman, OK 73019, United States.
Daniel R SheffieldDepartment of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Room 1000, Norman, OK 73019, United States.
Dustin A DimasDepartment of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Room 1000, Norman, OK 73019, United States.
Riki DasDepartment of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, MN 55455, United States.
Sanjay MaityDepartment of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, MN 55455, United States.
Mark D DistefanoDepartment of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, MN 55455, United States.
Shanteri SinghDepartment of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Room 1000, Norman, OK 73019, United States. Electronic address: shanteri.singh@ou.edu.

Funding

Structure-Function Studies of MsvR, a Methanogen-Specific Transcriptional RegulaP20GM103640 · NIGMS · UNIVERSITY OF OKLAHOMA · PI MOOERS, BLAINE H. M. · 2012 to 2021
$20.4M
Chemical Approaches for Exploring Protein Prenylation in Living CellsR35GM141853 · NIGMS · UNIVERSITY OF MINNESOTA · PI MARK D DISTEFANO · 2021 to 2026
$2.4M
Acquisition of a Preparative High-Performance Liquid Chromatography (HPLC) SystemR01GM138800 · NIGMS · UNIVERSITY OF OKLAHOMA · PI Shanteri Singh · 2022 to 2026
$1.7M
NIGMS NIH HHS P20 GM103640NIGMS NIH HHS R01 GM138800NIGMS NIH HHS R35 GM141853
6 · The paper itself

Abstract

Isoprene chemoenzymatic cascades (ICCs) overcome the complexity of natural pathways by leveraging a streamlined two-enzyme cascade, facilitating efficient synthesis of C5-isoprene diphosphate precursors from readily available alcohol derivatives. Despite the documented promiscuity of enzymes in ICCs, exploration of their potential for accessing novel compounds remains limited, and existing methods require additional enzymes for generating longer-chain diphosphates. In this study, we present the utility of Streptococcus mutans undecaprenol kinase (SmUdpK) for the chemoenzymatic synthesis of diverse non-natural isoprenoids. Using a library of 50 synthetic alcohols, we demonstrate that SmUdpK's promiscuity extends to allylic chains as small as four carbons and benzylic alcohols with various substituents. Subsequently, SmUdpK is utilized in an ICC with isopentenyl phosphate kinase and aromatic prenyltransferase to generate multiple non-natural isoprenoids. This work provides evidence that, with proper optimization, SmUdpK can act as the first enzyme in these ICCs, enhancing access to both valuable and novel compounds.

Indexed as

Streptococcus mutansTerpenesMolecular StructureTerpenesBiotechnologyEnzyme cascadeIsopentenyl phosphate kinaseIsoprenoidsUndecaprenol kinase

Identifiers

PMID39128243
PMCPMC11365746

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.