Evidence map›Paper›PMID 39138300›Full record

ArticleScientific reports2024

Chloroplast genomes of Eriobotrya elliptica and an unknown wild loquat "YN-1".

Zhicong Lin, Qing Guo, Shiwei Ma, Hailan Lin, Shunquan Lin, Shoukai Lin, Jincheng Wu

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhicong LinCollege of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China.
Qing GuoCollege of Environmental and Biological Engineering, Putian University, Putian, 351100, China.
Shiwei MaCollege of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China.
Hailan LinCollege of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China.
Shunquan LinCollege of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China.
Shoukai LinCollege of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China. linshoukai@ptu.edu.cn.
Jincheng WuCollege of Environmental and Biological Engineering, Putian University, Putian, 351100, China. wjc2384@163.com.

Funding

Fujian Provincial Natural Science Foundation Youth Project 2022J05254Fujian Provincial University industry-university Cooperation project 2022N5006Putian University Putian City Science and Technology Plan Project 2021ZP09Putian University scientific research launch project 2022051
6 · The paper itself

Abstract

The chloroplast genomes of wild loquat can help to determine their place in the history of evolution. Here, we sequenced and assembled two novel wild loquat's chloroplast genomes, one is Eriobotrya elliptica, and the other is an unidentified wild loquat, which we named "YN-1". Their sizes are 159,471 bp and 159,399 bp, respectively. We also assembled a cultivated loquat named 'JFZ', its chloroplast genome size is 159,156 bp. A comparative study was conducted with six distinct species of loquats, including five wild loquats and one cultivated loquat. The results showed that both E. elliptica and "YN-1" have 127 genes, one gene more than E. fragrans, which is psbK. Regions trnF-GAA-ndhJ, petG-trnP-UGG, and rpl32-trnL-UAG were found to exhibit high variability. It was discovered that there was a positive selection on rpl22 and rps12. RNA editing analysis found several chilling stress-specific RNA editing sites, especially in rpl2 gene. Phylogenetic analysis results showed that "YN-1" is closely related to E. elliptica, E. obovata and E. henryi.

Indexed as

EriobotryaGenome, ChloroplastPhylogenyRNA EditingChloroplast genomePhylogenyRNA editingWild loquat

Identifiers

PMID39138300
PMCPMC11322449

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.