Evidence map›Paper›PMID 39138332›Full record

ArticleNature structural & molecular biology2024

Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.

Josip Ivica, Nejc Kejzar, Hinze Ho, Imogen Stockwell, Viktor Kuchtiak, Alexander M Scrutton, Terunaga Nakagawa, Ingo H Greger

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Josip Ivica *Neurobiology Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, UK.
Nejc Kejzar *Neurobiology Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, UK.
Hinze Ho *Neurobiology Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, UK.
Imogen StockwellNeurobiology Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, UK.
Viktor KuchtiakNeurobiology Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, UK.
Alexander M ScruttonNeurobiology Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, UK.
Terunaga NakagawaDepartment of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, TN, USA. terunaga.nakagawa@Vanderbilt.Edu.
Ingo H GregerNeurobiology Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, UK. ig@mrc-lmb.cam.ac.uk.ORCID http://orcid.org/0000-0002-7291-2581

Funding

Mechanism of functional modulation of glutamate receptors by their auxiliary subunitsR01MH123474 · NIMH · VANDERBILT UNIVERSITY · PI Terunaga Nakagawa · 2022 to 2026
$2.3M
Thermo Scientific Glacios cryo-TEMS10OD030292 · OD · VANDERBILT UNIVERSITY · PI NAKAGAWA, TERUNAGA · 2021 to 2021
$2.0M
GPU-Accelerated Parallel Computer for Life Sciences ResearchS10OD032234 · OD · VANDERBILT UNIVERSITY · PI SMITH, JARROD ANSON · 2022 to 2022
$600k
Mechanism of functional modulation of glutamate receptors by their auxiliary subunitsR56MH123474 · NIMH · VANDERBILT UNIVERSITY · PI NAKAGAWA, TERUNAGA · 2020 to 2020
$383k
Medical Research Council MC_U105174197NIH HHS S10 OD030292NIH HHS S10 OD032234NIMH NIH HHS R01 MH123474NIMH NIH HHS R56 MH123474Wellcome Trust
6 · The paper itself

Abstract

AMPA glutamate receptors (AMPARs) are ion channel tetramers that mediate the majority of fast excitatory synaptic transmission. They are composed of four subunits (GluA1-GluA4); the GluA2 subunit dominates AMPAR function throughout the forebrain. Its extracellular N-terminal domain (NTD) determines receptor localization at the synapse, ensuring reliable synaptic transmission and plasticity. This synaptic anchoring function requires a compact NTD tier, stabilized by a GluA2-specific NTD interface. Here we show that low pH conditions, which accompany synaptic activity, rupture this interface. All-atom molecular dynamics simulations reveal that protonation of an interfacial histidine residue (H208) centrally contributes to NTD rearrangement. Moreover, in stark contrast to their canonical compact arrangement at neutral pH, GluA2 cryo-electron microscopy structures exhibit a wide spectrum of NTD conformations under acidic conditions. We show that the consequences of this pH-dependent conformational control are twofold: rupture of the NTD tier slows recovery from desensitized states and increases receptor mobility at mouse hippocampal synapses. Therefore, a proton-triggered NTD switch will shape both AMPAR location and kinetics, thereby impacting synaptic signal transmission.

Indexed as

Cryoelectron MicroscopyMolecular Dynamics SimulationProtonsReceptors, AMPASynapsesAnimalsHippocampusHumansHydrogen-Ion ConcentrationKineticsMiceProtein ConformationProtein DomainsSynaptic TransmissionProtonsReceptors, AMPA

Identifiers

PMID39138332
PMCPMC11479944

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.