Evidence map›Paper›PMID 39138385›Full record

ArticleNature genetics2024

Chloroplast and whole-genome sequencing shed light on the evolutionary history and phenotypic diversification of peanuts.

Zheng Zheng, Ziqi Sun, Feiyan Qi, Yuanjin Fang, Ke Lin, Stefano Pavan, Bingyan Huang, Wenzhao Dong, Pei Du, Mengdi Tian and 19 more

Abstract read
In one paragraph

Article in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
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  5. Genome-Wide Analysis and Expression Profiles ofInternational journal of molecular sciences · 2026
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  6. Article
  7. Article
  8. Article
  9. Article
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  12. Chromosomal variations and evolution in Arachis species revealed by single-copy FISH karyotyping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Functional Genomics: From Soybean to Legume.International journal of molecular sciences · 2025
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Zheng Zheng *Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China. zhengzheng@hnagri.org.cn.ORCID http://orcid.org/0000-0002-2001-5336
Ziqi Sun *Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Feiyan Qi *Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Yuanjin Fang *Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Ke Lin *Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Stefano Pavan *National Innovation Centre for Bio-breeding Industry, Xinxiang, China.
Bingyan HuangInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Wenzhao DongInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Pei DuInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Mengdi TianInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Lei ShiInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Jing XuInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Suoyi HanInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Hua LiuInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Li QinInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Zhongxin ZhangInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Xiaodong DaiInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Lijuan MiaoInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Ruifang ZhaoInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Juan WangInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Yanlin LiaoNational Innovation Centre for Bio-breeding Industry, Xinxiang, China.
Alun LiAgricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.ORCID http://orcid.org/0000-0003-2056-0833
Jue RuanAgricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.ORCID http://orcid.org/0000-0003-3713-3192
Chiara DelventoDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy.ORCID http://orcid.org/0000-0002-3690-2407
Riccardo Aiese CiglianoSequentia Biotech, Barcelona, Spain.
Chris MaliepaardPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Yuling BaiPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Richard G F VisserPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0002-0213-4016
Xinyou ZhangInstitute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, China. haasz@126.com.ORCID http://orcid.org/0000-0002-1942-997X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cultivated peanut (Arachis hypogaea L.) is a widely grown oilseed crop worldwide; however, the events leading to its origin and diversification are not fully understood. Here by combining chloroplast and whole-genome sequence data from a large germplasm collection, we show that the two subspecies of A. hypogaea (hypogaea and fastigiata) likely arose from distinct allopolyploidization and domestication events. Peanut genetic clusters were then differentiated in relation to dissemination routes and breeding efforts. A combination of linkage mapping and genome-wide association studies allowed us to characterize genes and genomic regions related to main peanut morpho-agronomic traits, namely flowering pattern, inner tegument color, growth habit, pod/seed weight and oil content. Together, our findings shed light on the evolutionary history and phenotypic diversification of peanuts and might be of broad interest to plant breeders.

Indexed as

ArachisChloroplastsEvolution, MolecularGenome, PlantGenome-Wide Association StudyPhenotypeWhole Genome SequencingChromosome MappingDomesticationPhylogenyPlant Breeding

Identifiers

PMID39138385
PMCPMC11387195

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.