Evidence map›Paper›PMID 39144147›Full record

ArticleFrontiers in immunology2024

Targeted multiplex validation of CSF proteomic biomarkers: implications for differentiation of PCNSL from tumor-free controls and other brain tumors.

Jingjing Ma, Zhiguang Lin, Yaqi Zhang, Yun Ding, Qiming Tang, Yufeng Qian, Bo Jin, Ruben Y Luo, Wei-Li Liao, Sheeno Thyparambil and 12 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Jingjing Ma *Department of Hematology, Huashan Hospital, Fudan University, Shanghai, China.
Zhiguang Lin *Department of Hematology, Huashan Hospital, Fudan University, Shanghai, China.
Yaqi Zhang *College of Automation, Guangdong Polytechnic Normal University, Guangzhou, China.
Yun DingResearch and Development, mProbe Inc. Palo Alto, CA, United States.
Qiming TangResearch and Development, mProbe Inc. Palo Alto, CA, United States.
Yufeng QianResearch and Development, mProbe Inc. Palo Alto, CA, United States.
Bo JinResearch and Development, mProbe Inc. Palo Alto, CA, United States.
Ruben Y LuoDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, United States.
Wei-Li LiaoResearch and Development, mProbe Inc. Palo Alto, CA, United States.
Sheeno ThyparambilResearch and Development, mProbe Inc. Palo Alto, CA, United States.
Zhi HanDepartment of Biomedical Data Science, Stanford University School of Medicine, Stanford, CA, United States.
C James ChouDepartment of Surgery, Stanford University School of Medicine, Stanford, CA, United States.
James SchillingResearch and Development, mProbe Inc. Palo Alto, CA, United States.
Qing LiDepartment of Hematology, Huashan Hospital, Fudan University, Shanghai, China.
Mengxue ZhangDepartment of Hematology, Huashan Hospital, Fudan University, Shanghai, China.
Yunan LinDepartment of Hematology, Huashan Hospital, Fudan University, Shanghai, China.
Yan MaDepartment of Hematology, Huashan Hospital, Fudan University, Shanghai, China.
Karl G SylvesterDepartment of Surgery, Stanford University School of Medicine, Stanford, CA, United States.
Seema NagpalDepartment of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, United States.
Doff B McElhinneyDepartments of Cardiothoracic Surgery and Pediatrics (Cardiology), Stanford University School of Medicine, Stanford, CA, United States.
Xuefeng B LingDepartment of Surgery, Stanford University School of Medicine, Stanford, CA, United States.
Bobin ChenDepartment of Hematology, Huashan Hospital, Fudan University, Shanghai, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Primary central nervous system lymphoma (PCNSL) is a rare type of non-Hodgkin's lymphoma that affects brain parenchyma, eyes, cerebrospinal fluid, and spinal cord. Diagnosing PCNSL can be challenging because imaging studies often show similar patterns as other brain tumors, and stereotactic brain lesion biopsy conformation is invasive and not always possible. This study aimed to validate a previous proteomic profiling (PMID: 32610669) of cerebrospinal fluid (CSF) and develop a CSF-based proteomic panel for accurate PCNSL diagnosis and differentiation. Methods: CSF samples were collected from patients of 30 PCNSL, 30 other brain tumors, and 31 tumor-free/benign controls. Liquid chromatography tandem-mass spectrometry targeted proteomics analysis was used to establish CSF-based proteomic panels. Results: Final proteomic panels were selected and optimized to diagnose PCNSL from tumor-free controls or other brain tumor lesions with an area under the curve (AUC) of 0.873 (95%CI: 0.723-0.948) and 0.937 (95%CI: 0.807- 0.985), respectively. Pathways analysis showed diagnosis panel features were significantly enriched in pathways related to extracellular matrices-receptor interaction, focal adhesion, and PI3K-Akt signaling, while prion disease, mineral absorption and HIF-1 signaling were significantly enriched with differentiation panel features. Discussion: This study suggests an accurate clinical test panel for PCNSL diagnosis and differentiation with CSF-based proteomic signatures, which may help overcome the challenges of current diagnostic methods and improve patient outcomes.

Indexed as

Biomarkers, TumorBrain NeoplasmsProteomicsAdultAgedDiagnosis, DifferentialFemaleHumansLymphoma, Non-HodgkinMaleMiddle AgedBiomarkers, Tumorcerebrospinal fluid (CSF)diffuse large B-cell lymphoma (DLBCL)liquid chromatography tandem-mass spectrometry (LC-MS/MS)primary central nervous system lymphoma (PCNSL)targeted proteomics

Identifiers

PMID39144147
PMCPMC11322575

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.