Evidence map›Paper›PMID 39144255›Full record

ArticleFrontiers in cell and developmental biology2024

Uncovering hidden genetic variations: long-read sequencing reveals new insights into tuberous sclerosis complex.

Jing Duan, Shirang Pan, Yuanzhen Ye, Zhanqi Hu, Li Chen, Dachao Liang, Tao Fu, Lintao Zhan, Zhuo Li, Jianxiang Liao and 1 more

Abstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. The landscape of non-reference SINE-VNTR-Alus in amyotrophic lateral sclerosis.Experimental biology and medicine (Maywood, N.J.) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jing DuanDepartment of Neurology, Shenzhen Children's Hospital, Shenzhen, Guangdong, China.
Shirang PanGrandomics Biosciences, Beijing, China.
Yuanzhen YeDepartment of Neurology, Shenzhen Children's Hospital, Shenzhen, Guangdong, China.
Zhanqi HuDepartment of Neurology, Shenzhen Children's Hospital, Shenzhen, Guangdong, China.
Li ChenDepartment of Neurology, Shenzhen Children's Hospital, Shenzhen, Guangdong, China.
Dachao LiangShenzhen A-Smart Medical Research Center, Shenzhen Research Institute of the Chinese University of Hong Kong, Shenzhen, Guangdong, China.
Tao FuShenzhen A-Smart Medical Research Center, Shenzhen Research Institute of the Chinese University of Hong Kong, Shenzhen, Guangdong, China.
Lintao ZhanGrandomics Biosciences, Beijing, China.
Zhuo LiShenzhen A-Smart Medical Research Center, Shenzhen Research Institute of the Chinese University of Hong Kong, Shenzhen, Guangdong, China.
Jianxiang LiaoDepartment of Neurology, Shenzhen Children's Hospital, Shenzhen, Guangdong, China.
Xia ZhaoDepartment of Neurology, Shenzhen Children's Hospital, Shenzhen, Guangdong, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Tuberous sclerosis is a multi-system disorder caused by mutations in either Methods: We hypothesized that the causal variants of patients with NMI may be structural variants or deep intronic variants. To investigate this, we sequenced the DNA of 26 tuberous sclerosis patients with NMI using targeted long-read sequencing. Results: We identified likely pathogenic/pathogenic variants in 13 of the cases, of which 6 were large deletions, four were InDels, two were deep intronic variants, one had retrotransposon insertion in either Conclusion: Our findings expand the current knowledge of known pathogenic variants related to tuberous sclerosis, particularly uncovering mosaic complex structural variations and retrotransposon insertions that have not been previously reported in tuberous sclerosis. Our findings suggest a higher prevalence of mosaicism among tuberous sclerosis patients than previously recognized. Our results indicate that long-read sequencing is a valuable approach for tuberous sclerosis cases with no mutation identified (NMI).

Indexed as

Alu elementmosaic complex structural variantmosaic variantsoptical genome mappingSINE-VNTR-Alusstructural variation

Identifiers

PMID39144255
PMCPMC11321964

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.