Evidence map›Paper›PMID 39146208›Full record

ArticleeLife2024

A dynamic generative model can extract interpretable oscillatory components from multichannel neurophysiological recordings.

Proloy Das, Mingjian He, Patrick L Purdon

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Detection of High-Frequency Oscillations from Intracranial EEG Data with Switching State Space Model.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2024
    Article
  3. Multilevel State-Space Models Enable High Precision Event Related Potential Analysis.Conference record. Asilomar Conference on Signals, Systems & Computers
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Proloy DasDepartment of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Stanford, United States.ORCID https://orcid.org/0000-0002-8807-042X
Mingjian HeDepartment of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Stanford, United States.ORCID https://orcid.org/0000-0002-6688-8693
Patrick L PurdonDepartment of Anesthesiology, Perioperative and Pain Medicine, Stanford University, Stanford, United States.ORCID https://orcid.org/0000-0003-0080-3340

Funding

Mapping the Human Connectome: Structure, Function, and HeritabilityU54MH091657 · NIMH · WASHINGTON UNIVERSITY · PI UGURBIL, KAMIL, VAN ESSEN, DAVID C · 2010 to 2014
$34.7M
Advanced signal processing methods for neural data analysis to support development of brain dynamic biomarkers for research and clinical applications in patients with Alzheimer's and related dementiasR01AG079345 · NIA · STANFORD UNIVERSITY · PI Patrick L. Purdon · 2023 to 2026
$5.0M
Noninvasive Low-cost Biomarkers for Preclinical Diagnosis and Longitudinal Tracking of Alzheimer's Disease Using Sleep and Resting State EEGR01AG054081 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI DICKERSON, BRADFORD C, PRERAU, MICHAEL J · 2017 to 2021
$4.2M
The Aging Brain Under General Anesthesia: Neurophysiology, Neuroimaging Biomarkers of Aging and Alzheimer's Disease, and Post-Operative Cognitive OutcomesR01AG056015 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI DICKERSON, BRADFORD C, PURDON, PATRICK L. · 2017 to 2021
$3.2M
NIA NIH HHS R01 AG054081NIA NIH HHS R01 AG056015NIA NIH HHS R01 AG079345NIH HHS R01AG054081-01A1NIMH NIH HHS U54 MH091657
6 · The paper itself

Abstract

Modern neurophysiological recordings are performed using multichannel sensor arrays that are able to record activity in an increasingly high number of channels numbering in the 100s to 1000s. Often, underlying lower-dimensional patterns of activity are responsible for the observed dynamics, but these representations are difficult to reliably identify using existing methods that attempt to summarize multivariate relationships in a post hoc manner from univariate analyses or using current blind source separation methods. While such methods can reveal appealing patterns of activity, determining the number of components to include, assessing their statistical significance, and interpreting them requires extensive manual intervention and subjective judgment in practice. These difficulties with component selection and interpretation occur in large part because these methods lack a generative model for the underlying spatio-temporal dynamics. Here, we describe a novel component analysis method anchored by a generative model where each source is described by a bio-physically inspired state-space representation. The parameters governing this representation readily capture the oscillatory temporal dynamics of the components, so we refer to it as oscillation component analysis. These parameters - the oscillatory properties, the component mixing weights at the sensors, and the number of oscillations - all are inferred in a data-driven fashion within a Bayesian framework employing an instance of the expectation maximization algorithm. We analyze high-dimensional electroencephalography and magnetoencephalography recordings from human studies to illustrate the potential utility of this method for neuroscience data.

Indexed as

ElectroencephalographyModels, NeurologicalBayes TheoremBrainHumansMagnetoencephalographycomponent analysiscortical oscillationdynamical modelshumanneurosciencesource separationstate space

Identifiers

PMID39146208
PMCPMC11326773

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.