Evidence map›Paper›PMID 39148013›Full record

ArticleBMC plant biology2024

β-Aminobutyric acid promotes stress tolerance, physiological adjustments, as well as broad epigenetic changes at DNA and RNA nucleobases in field elms (Ulmus minor).

Hans Hoenicka, Susanne Bein, Marta Starczak, Wolfgang Graf, Dieter Hanelt, Daniel Gackowski

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hans HoenickaThünen Institute of Forest Genetics, Sieker Landstr. 2, D-22927, Grosshansdorf, Germany. h.hoenicka@thuenen.de.ORCID http://orcid.org/0000-0001-7226-3772
Susanne BeinThünen Institute of Forest Genetics, Sieker Landstr. 2, D-22927, Grosshansdorf, Germany.
Marta StarczakDepartment of Clinical Biochemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, Bydgoszcz, 85-095, Poland.ORCID http://orcid.org/0000-0003-4098-7412
Wolfgang GrafThünen Institute of Forest Genetics, Sieker Landstr. 2, D-22927, Grosshansdorf, Germany.
Dieter HaneltInstitute of Plant Science and Microbiology, University of Hamburg, Ohnhorst. 18, D-22609, Hamburg, Germany.
Daniel GackowskiDepartment of Clinical Biochemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, Bydgoszcz, 85-095, Poland.ORCID http://orcid.org/0000-0002-7259-1511

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundβ-Aminobutyric acid (BABA) has been successfully used to prime stress resistance in numerous plant species; however, its effectiveness in forest trees has been poorly explored thus far. This study aimed to investigate the influence of BABA on morphological, physiological, and epigenetic parameters in field elms under various growth conditions. Epigenetic changes were assessed in both DNA and RNA through the use of reversed-phase ultra-performance liquid chromatography (UPLC) coupled with sensitive mass spectrometry.

resultsThe presented results confirm the influence of BABA on the development, physiology, and stress tolerance in field elms. However, the most important findings are related to the broad epigenetic changes promoted by this amino acid, which involve both DNA and RNA. Our findings confirm, for the first time, that BABA influences not only well-known epigenetic markers in plants, such as 5-methylcytosine, but also several other non-canonical nucleobases, such as 5-hydroxymethyluracil, 5-formylcytosine, 5-hydroxymethylcytosine, N6-methyladenine, uracil (in DNA) and thymine (in RNA). The significant effect on the levels of N6-methyladenine, the main bacterial epigenetic marker, is particularly noteworthy. In this case, the question arises as to whether this effect is due to epigenetic changes in the microbiome, the plant genome, or both.

conclusionsThe plant phenotype is the result of complex interactions between the plant's DNA, the microbiome, and the environment. We propose that different types of epigenetic changes in the plant and microbiome may play important roles in the largely unknown memory process that enables plants to adapt faster to changing environmental conditions.

Indexed as

Epigenesis, GeneticRNA, PlantAminobutyratesDNA, PlantStress, Physiological3-aminobutyric acidAminobutyratesDNA, PlantRNA, PlantDrought stressEpigeneticsForest treesHoloepigenomeHologenomeNon-canonical nucleobasesPlant memoryPrimingStress toleranceβ-Aminobutyric acid

Identifiers

PMID39148013
PMCPMC11325618

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.