Evidence map›Paper›PMID 39151014›Full record

ArticleScience advances2024

The genomic potential of photosynthesis in piconanoplankton is functionally redundant but taxonomically structured at a global scale.

Alexandre Schickele, Pavla Debeljak, Sakina-Dorothée Ayata, Lucie Bittner, Eric Pelletier, Lionel Guidi, Jean-Olivier Irisson

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alexandre SchickeleSorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, F-06230 Villefranche-sur-Mer, France.ORCID 0000-0002-4842-6890
Pavla DebeljakSorbonne Université, Muséum National d'Histoire Naturelle, CNRS, EPHE, Université des Antilles, Institut de Systématique, Evolution, Biodiversité (ISYEB), F-75005, Paris, France.ORCID 0000-0002-5542-0358
Sakina-Dorothée AyataSorbonne Université, CNRS, IRD, MNHN, Laboratoire d'Océanographie et du Climat, Institut Pierre Simon Laplace, LOCEAN-IPSL, F-75005 Paris, France.ORCID 0000-0003-3226-9779
Lucie BittnerSorbonne Université, Muséum National d'Histoire Naturelle, CNRS, EPHE, Université des Antilles, Institut de Systématique, Evolution, Biodiversité (ISYEB), F-75005, Paris, France.ORCID 0000-0001-8291-7063
Eric PelletierMetabolic Genomics, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Université d'Evry, Université Paris Saclay, 91000 Evry, France.ORCID 0000-0003-4228-1712
Lionel GuidiSorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, F-06230 Villefranche-sur-Mer, France.ORCID 0000-0002-6669-5744
Jean-Olivier IrissonSorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, F-06230 Villefranche-sur-Mer, France.ORCID 0000-0003-4920-3880

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbon fixation is a key metabolic function shaping marine life, but the underlying taxonomic and functional diversity involved is only partially understood. Using metagenomic resources targeted at marine piconanoplankton, we provide a reproducible machine learning framework to derive the potential biogeography of genomic functions through the multi-output regression of gene read counts on environmental climatologies. Leveraging the Marine Atlas of Tara Oceans Unigenes, we investigate the genomic potential of primary production in the global ocean. The latter is performed by ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO) and is often associated with carbon concentration mechanisms in piconanoplankton, major marine unicellular photosynthetic organisms. We show that the genomic potential supporting C

Indexed as

PhotosynthesisRibulose-Bisphosphate CarboxylaseCarbon CycleGenomicsMetagenomeMetagenomicsPhylogenyPlanktonSeawaterRibulose-Bisphosphate Carboxylase

Identifiers

PMID39151014
PMCPMC11328907

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.