Evidence map›Paper›PMID 39152104›Full record

ArticleNature communications2024

Quantifying biomolecular organisation in membranes with brightness-transit statistics.

Falk Schneider, Pablo F Cespedes, Narain Karedla, Michael L Dustin, Marco Fritzsche

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Intensity-Based Estimation of Monomeric Brightness for Fluorescent Proteins.International journal of molecular sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Falk SchneiderKennedy Institute for Rheumatology, Roosevelt Drive, University of Oxford, Oxford, OX3 7LF, United Kingdom. falkschn@usc.edu.ORCID 0000-0003-0502-9139
Pablo F CespedesKennedy Institute for Rheumatology, Roosevelt Drive, University of Oxford, Oxford, OX3 7LF, United Kingdom.ORCID 0000-0002-1641-4107
Narain KaredlaKennedy Institute for Rheumatology, Roosevelt Drive, University of Oxford, Oxford, OX3 7LF, United Kingdom.
Michael L DustinKennedy Institute for Rheumatology, Roosevelt Drive, University of Oxford, Oxford, OX3 7LF, United Kingdom.ORCID 0000-0003-4983-6389
Marco FritzscheKennedy Institute for Rheumatology, Roosevelt Drive, University of Oxford, Oxford, OX3 7LF, United Kingdom. marco.fritzsche@kennedy.ox.ac.uk.ORCID 0000-0002-8712-7471

Funding

European Commission (EC) GA-2013-609409European Commission (EC) LTFCOFUND2013European Commission (EC) SYNECT AdG 670930European Molecular Biology Organization (EMBO) ALTF 1420-2015European Molecular Biology Organization (EMBO) ALTF 849-2020Human Frontier Science Program (HFSP) LT000404/2021-LRCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/S004459/1Wellcome Trust (Wellcome) 100262/Z/12/ZWellcome Trust (Wellcome) 212343/Z/18/Z
6 · The paper itself

Abstract

Cells crucially rely on the interactions of biomolecules at their plasma membrane to maintain homeostasis. Yet, a methodology to systematically quantify biomolecular organisation, measuring diffusion dynamics and oligomerisation, represents an unmet need. Here, we introduce the brightness-transit statistics (BTS) method based on fluorescence fluctuation spectroscopy and combine information from brightness and transit times to elucidate biomolecular diffusion and oligomerisation in both cell-free in vitro and in vitro systems incorporating living cells. We validate our approach in silico with computer simulations and experimentally using oligomerisation of EGFP tethered to supported lipid bilayers. We apply our pipeline to study the oligomerisation of CD40 ectodomain in vitro and endogenous CD40 on primary B cells. While we find a potential for CD40 to oligomerize in a concentration or ligand depended manner, we do not observe mobile oligomers on B cells. The BTS method combines sensitive analysis, quantification, and intuitive visualisation of dynamic biomolecular organisation.

Indexed as

Cell MembraneGreen Fluorescent ProteinsLipid BilayersAnimalsB-LymphocytesComputer SimulationDiffusionHumansProtein MultimerizationSpectrometry, Fluorescenceenhanced green fluorescent proteinGreen Fluorescent ProteinsLipid Bilayers

Identifiers

PMID39152104
PMCPMC11329664

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.